miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2667 5' -55.6 NC_001491.2 + 12196 0.66 0.918386
Target:  5'- aGCGGaagaccucGGUGCCGgcgguGGcGGCUGUCa -3'
miRNA:   3'- -CGCCa-------CCGCGGUaagu-UCuCCGACAG- -5'
2667 5' -55.6 NC_001491.2 + 12717 0.66 0.912512
Target:  5'- cCGGUagcuGGuCGaCCAggggggCGAGGGGCUGUUg -3'
miRNA:   3'- cGCCA----CC-GC-GGUaa----GUUCUCCGACAG- -5'
2667 5' -55.6 NC_001491.2 + 148378 0.66 0.906395
Target:  5'- cGCgGGUGGCGCCuggCAcaGGGCUu-- -3'
miRNA:   3'- -CG-CCACCGCGGuaaGUucUCCGAcag -5'
2667 5' -55.6 NC_001491.2 + 110695 0.66 0.906395
Target:  5'- cGCGGgcGGCGCUAauUUCGGcGGcacGCUGUCg -3'
miRNA:   3'- -CGCCa-CCGCGGU--AAGUUcUC---CGACAG- -5'
2667 5' -55.6 NC_001491.2 + 107635 0.66 0.906395
Target:  5'- -aGGUGGCGCCAUauuccCGAGuuAGGgUGg- -3'
miRNA:   3'- cgCCACCGCGGUAa----GUUC--UCCgACag -5'
2667 5' -55.6 NC_001491.2 + 27107 0.66 0.893445
Target:  5'- gGCGGcccGGCGCCGcUCcGGAGcGC-GUCc -3'
miRNA:   3'- -CGCCa--CCGCGGUaAGuUCUC-CGaCAG- -5'
2667 5' -55.6 NC_001491.2 + 103989 0.66 0.886618
Target:  5'- gGCGGUGGCGUCugGUUUGccgguGGcGGCUGa- -3'
miRNA:   3'- -CGCCACCGCGG--UAAGU-----UCuCCGACag -5'
2667 5' -55.6 NC_001491.2 + 3025 0.67 0.849134
Target:  5'- -gGGUGGC-CCGgcagCAGGuGGCgGUCg -3'
miRNA:   3'- cgCCACCGcGGUaa--GUUCuCCGaCAG- -5'
2667 5' -55.6 NC_001491.2 + 3790 0.68 0.832688
Target:  5'- cGCGGaccgagGGCGCCGgggCcucGGGCUGUUg -3'
miRNA:   3'- -CGCCa-----CCGCGGUaa-GuucUCCGACAG- -5'
2667 5' -55.6 NC_001491.2 + 68730 0.68 0.824182
Target:  5'- aCGGUGGCGCgGcUCGGGuAGGCcGg- -3'
miRNA:   3'- cGCCACCGCGgUaAGUUC-UCCGaCag -5'
2667 5' -55.6 NC_001491.2 + 2539 0.68 0.823321
Target:  5'- aGCGccgGGCGCCAggccUCGGGGaacagcuGGUUGUCg -3'
miRNA:   3'- -CGCca-CCGCGGUa---AGUUCU-------CCGACAG- -5'
2667 5' -55.6 NC_001491.2 + 83718 0.71 0.65958
Target:  5'- cUGGUGGCGCgAcgacggaGAGAGGCUGg- -3'
miRNA:   3'- cGCCACCGCGgUaag----UUCUCCGACag -5'
2667 5' -55.6 NC_001491.2 + 33841 0.72 0.597567
Target:  5'- cGCGGUGcGCGCCGUUCuGGuGGUg--- -3'
miRNA:   3'- -CGCCAC-CGCGGUAAGuUCuCCGacag -5'
2667 5' -55.6 NC_001491.2 + 83540 1.12 0.001765
Target:  5'- uGCGGUGGCGCCAUUCAAGAGGCUGUCg -3'
miRNA:   3'- -CGCCACCGCGGUAAGUUCUCCGACAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.