miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26670 3' -52.6 NC_005808.1 + 2318 0.66 0.799115
Target:  5'- gUCCAGCGacaggcacagaucgcGCAgCCUGuCCUCGaUCUGu -3'
miRNA:   3'- -AGGUUGC---------------UGUaGGACuGGAGCaAGGC- -5'
26670 3' -52.6 NC_005808.1 + 23872 0.67 0.774825
Target:  5'- gUUCGACGGCAUCCcGugCcgcCGUaCCGa -3'
miRNA:   3'- -AGGUUGCUGUAGGaCugGa--GCAaGGC- -5'
26670 3' -52.6 NC_005808.1 + 13506 0.67 0.743221
Target:  5'- gUCCcGC-ACGggCCUGACCUCGgcgcCCGa -3'
miRNA:   3'- -AGGuUGcUGUa-GGACUGGAGCaa--GGC- -5'
26670 3' -52.6 NC_005808.1 + 26009 0.67 0.743221
Target:  5'- aCCAucGCGugGUC--GGCCUCG-UCCGg -3'
miRNA:   3'- aGGU--UGCugUAGgaCUGGAGCaAGGC- -5'
26670 3' -52.6 NC_005808.1 + 12619 0.68 0.699481
Target:  5'- gUUCGACGgcuGCAUCCaGGCCgUCGUgcgCCGc -3'
miRNA:   3'- -AGGUUGC---UGUAGGaCUGG-AGCAa--GGC- -5'
26670 3' -52.6 NC_005808.1 + 27815 0.68 0.699481
Target:  5'- uUCCAGCGACAUCgUGAagcagaUCGacaCCGa -3'
miRNA:   3'- -AGGUUGCUGUAGgACUgg----AGCaa-GGC- -5'
26670 3' -52.6 NC_005808.1 + 1371 0.7 0.552342
Target:  5'- aUCCGGCGACcgaagcgcaaGUCCUcgcggaauucuucGACCU-GUUCCGg -3'
miRNA:   3'- -AGGUUGCUG----------UAGGA-------------CUGGAgCAAGGC- -5'
26670 3' -52.6 NC_005808.1 + 28575 1.09 0.001477
Target:  5'- uUCCAACGACAUCCUGACCUCGUUCCGu -3'
miRNA:   3'- -AGGUUGCUGUAGGACUGGAGCAAGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.