Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26670 | 5' | -55.5 | NC_005808.1 | + | 15103 | 0.69 | 0.439834 |
Target: 5'- gGCGGC-CGAGGCCGccggcauccucGCGuGGUGCGu- -3' miRNA: 3'- aCGUCGuGCUCCGGU-----------CGC-UCAUGUuc -5' |
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26670 | 5' | -55.5 | NC_005808.1 | + | 16573 | 0.69 | 0.429892 |
Target: 5'- uUGUAGCGCGAcGcGCCGGaCGAGgcCGAc -3' miRNA: 3'- -ACGUCGUGCU-C-CGGUC-GCUCauGUUc -5' |
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26670 | 5' | -55.5 | NC_005808.1 | + | 4047 | 0.69 | 0.420084 |
Target: 5'- cGCGGCgaGCGgcAGGCCAGCGGcc-CAGGg -3' miRNA: 3'- aCGUCG--UGC--UCCGGUCGCUcauGUUC- -5' |
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26670 | 5' | -55.5 | NC_005808.1 | + | 5307 | 0.7 | 0.355391 |
Target: 5'- gGCAGguCGAGGCCGuaggccGCGAGcACGu- -3' miRNA: 3'- aCGUCguGCUCCGGU------CGCUCaUGUuc -5' |
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26670 | 5' | -55.5 | NC_005808.1 | + | 24562 | 0.7 | 0.346741 |
Target: 5'- cGCGGCgaugGCGAGGCCGGCcacGGU-CGGGc -3' miRNA: 3'- aCGUCG----UGCUCCGGUCGc--UCAuGUUC- -5' |
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26670 | 5' | -55.5 | NC_005808.1 | + | 13672 | 0.71 | 0.321703 |
Target: 5'- gGCAGCgGCGAGGCCcuggcuuuGUGGG-ACGAGu -3' miRNA: 3'- aCGUCG-UGCUCCGGu-------CGCUCaUGUUC- -5' |
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26670 | 5' | -55.5 | NC_005808.1 | + | 5749 | 0.71 | 0.313663 |
Target: 5'- -cCAGCGCGccGGgCAGCGAGUGCGc- -3' miRNA: 3'- acGUCGUGCu-CCgGUCGCUCAUGUuc -5' |
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26670 | 5' | -55.5 | NC_005808.1 | + | 34221 | 0.71 | 0.298041 |
Target: 5'- aGcCAGCGCGAGGCCGGguuCGAGccggACAu- -3' miRNA: 3'- aC-GUCGUGCUCCGGUC---GCUCa---UGUuc -5' |
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26670 | 5' | -55.5 | NC_005808.1 | + | 25090 | 0.72 | 0.283029 |
Target: 5'- cGCAGCGCGcccggcgccguGGGauaCAGCGGGUGCu-- -3' miRNA: 3'- aCGUCGUGC-----------UCCg--GUCGCUCAUGuuc -5' |
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26670 | 5' | -55.5 | NC_005808.1 | + | 14043 | 0.72 | 0.275751 |
Target: 5'- cGCGcCGCGAuGGCCGGCGGccGCAAGg -3' miRNA: 3'- aCGUcGUGCU-CCGGUCGCUcaUGUUC- -5' |
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26670 | 5' | -55.5 | NC_005808.1 | + | 31102 | 0.72 | 0.268623 |
Target: 5'- -uCGGUGC-AGGCCGGCGAGUgguGCGAGa -3' miRNA: 3'- acGUCGUGcUCCGGUCGCUCA---UGUUC- -5' |
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26670 | 5' | -55.5 | NC_005808.1 | + | 16326 | 0.73 | 0.235199 |
Target: 5'- cGCGauGCGCGAgccgaccaGGCCGGCGGGUGCc-- -3' miRNA: 3'- aCGU--CGUGCU--------CCGGUCGCUCAUGuuc -5' |
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26670 | 5' | -55.5 | NC_005808.1 | + | 13298 | 0.74 | 0.211034 |
Target: 5'- uUGCAGCGCGccgGGGCCGGCGuuGUAgGc- -3' miRNA: 3'- -ACGUCGUGC---UCCGGUCGCu-CAUgUuc -5' |
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26670 | 5' | -55.5 | NC_005808.1 | + | 14845 | 0.75 | 0.169083 |
Target: 5'- aGCcGgACGAGGgCAGCGAGUugcGCGAGg -3' miRNA: 3'- aCGuCgUGCUCCgGUCGCUCA---UGUUC- -5' |
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26670 | 5' | -55.5 | NC_005808.1 | + | 12017 | 0.76 | 0.138666 |
Target: 5'- aGCAGCGCGGccguGGCCGGCGAGg----- -3' miRNA: 3'- aCGUCGUGCU----CCGGUCGCUCauguuc -5' |
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26670 | 5' | -55.5 | NC_005808.1 | + | 30039 | 0.78 | 0.116678 |
Target: 5'- cGCAGCGCGAGGCCGGCaAGa----- -3' miRNA: 3'- aCGUCGUGCUCCGGUCGcUCauguuc -5' |
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26670 | 5' | -55.5 | NC_005808.1 | + | 28612 | 1.09 | 0.000546 |
Target: 5'- gUGCAGCACGAGGCCAGCGAGUACAAGa -3' miRNA: 3'- -ACGUCGUGCUCCGGUCGCUCAUGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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