miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26671 3' -59.8 NC_005808.1 + 12617 0.79 0.043934
Target:  5'- cCGUUCGACGgCUGCAUCCAGGCCGu -3'
miRNA:   3'- cGCGAGUUGUgGGCGUGGGUCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 12626 0.66 0.355233
Target:  5'- cGCGCUCGGCAUcgCUGCugCCguccuuuggcgucGGGUCGu -3'
miRNA:   3'- -CGCGAGUUGUG--GGCGugGG-------------UCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 12996 0.68 0.2782
Target:  5'- gGCGCUgGACaacuggcaaACCgCGCGCCUGGGCgCGg -3'
miRNA:   3'- -CGCGAgUUG---------UGG-GCGUGGGUCCG-GUu -5'
26671 3' -59.8 NC_005808.1 + 13139 0.66 0.39126
Target:  5'- cGCGCUUcguCGCCUggugccaggaGCACCUGGGCgCGAc -3'
miRNA:   3'- -CGCGAGuu-GUGGG----------CGUGGGUCCG-GUU- -5'
26671 3' -59.8 NC_005808.1 + 13280 0.73 0.13119
Target:  5'- gGCGUcuuUCAGCGCCgauugcagCGCGCCgGGGCCGg -3'
miRNA:   3'- -CGCG---AGUUGUGG--------GCGUGGgUCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 14713 0.66 0.37339
Target:  5'- uGCGcCUCcAUGCCCuGCGCCCGGuaGCCc- -3'
miRNA:   3'- -CGC-GAGuUGUGGG-CGUGGGUC--CGGuu -5'
26671 3' -59.8 NC_005808.1 + 14823 0.66 0.364666
Target:  5'- gGCGCU----GCCUuCGCCCAGGUCGAu -3'
miRNA:   3'- -CGCGAguugUGGGcGUGGGUCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 15145 0.66 0.364666
Target:  5'- cGCGCUgGcAUACCaGCGCCaGGGCCu- -3'
miRNA:   3'- -CGCGAgU-UGUGGgCGUGGgUCCGGuu -5'
26671 3' -59.8 NC_005808.1 + 15588 0.68 0.264352
Target:  5'- cGCGCUgcgGAUGCaCCGCGCCaucGGCCAGg -3'
miRNA:   3'- -CGCGAg--UUGUG-GGCGUGGgu-CCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 15744 0.74 0.11081
Target:  5'- uGCGCUCGACAUaCCGCACCUcguugccGCCAAu -3'
miRNA:   3'- -CGCGAGUUGUG-GGCGUGGGuc-----CGGUU- -5'
26671 3' -59.8 NC_005808.1 + 15944 0.66 0.37339
Target:  5'- -gGCUgCGGCGCCUuCGCgUAGGCCAGu -3'
miRNA:   3'- cgCGA-GUUGUGGGcGUGgGUCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 18420 0.66 0.356083
Target:  5'- cGCGCUCAuggacACGCCgaagcgCGCAgCCgucgaggcgcuGGGCCAGg -3'
miRNA:   3'- -CGCGAGU-----UGUGG------GCGUgGG-----------UCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 19094 0.67 0.307615
Target:  5'- cGCGCUCGcggaACugCCGCAggucgagauuCCCAcGGCgCAc -3'
miRNA:   3'- -CGCGAGU----UGugGGCGU----------GGGU-CCG-GUu -5'
26671 3' -59.8 NC_005808.1 + 19157 0.71 0.177718
Target:  5'- cGCGCgaacCAUCCGCAUCCcGGCCGg -3'
miRNA:   3'- -CGCGaguuGUGGGCGUGGGuCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 20013 0.67 0.306851
Target:  5'- uUGCUCGgcauggcGCGCCUGCAUCaCAGGCa-- -3'
miRNA:   3'- cGCGAGU-------UGUGGGCGUGG-GUCCGguu -5'
26671 3' -59.8 NC_005808.1 + 21326 0.67 0.31533
Target:  5'- cGgGCUUGAUGCCggccacCGCGCCCAGGUUg- -3'
miRNA:   3'- -CgCGAGUUGUGG------GCGUGGGUCCGGuu -5'
26671 3' -59.8 NC_005808.1 + 23153 0.67 0.323191
Target:  5'- gGCGUgCAGCccgagaaguCCCGCACCgugCAGGUCAAg -3'
miRNA:   3'- -CGCGaGUUGu--------GGGCGUGG---GUCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 23743 0.72 0.154979
Target:  5'- gGCGCgcagCAGCGCCaugccgGCGCcaCCGGGCCGAu -3'
miRNA:   3'- -CGCGa---GUUGUGGg-----CGUG--GGUCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 24664 0.66 0.382256
Target:  5'- gGUGUugUC-GCGCCCGC-CgCGGGCCAc -3'
miRNA:   3'- -CGCG--AGuUGUGGGCGuGgGUCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 25079 0.67 0.339348
Target:  5'- uCGCcaccCAGCGCagCGCGCCCGGcGCCGu -3'
miRNA:   3'- cGCGa---GUUGUGg-GCGUGGGUC-CGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.