miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26671 3' -59.8 NC_005808.1 + 33891 0.69 0.220267
Target:  5'- gGUGCgCGACAUCCG-ACCC-GGCCAGu -3'
miRNA:   3'- -CGCGaGUUGUGGGCgUGGGuCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 33712 0.72 0.140272
Target:  5'- aGCGCcauUCAcaaugAUGCCCGCGCCCgcuucguggcgaccgAGGCCAAc -3'
miRNA:   3'- -CGCG---AGU-----UGUGGGCGUGGG---------------UCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 33384 0.66 0.37339
Target:  5'- cGCGCcgCAGaacguGCgCCGCGCCgccgagCAGGCCAAc -3'
miRNA:   3'- -CGCGa-GUUg----UG-GGCGUGG------GUCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 32703 0.72 0.154979
Target:  5'- uGCaGCUCGACaucGCCaCGCGCCU-GGCCGAg -3'
miRNA:   3'- -CG-CGAGUUG---UGG-GCGUGGGuCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 32334 0.68 0.264352
Target:  5'- gGCGUccCGACAaCCGcCGCCCAGGUCGc -3'
miRNA:   3'- -CGCGa-GUUGUgGGC-GUGGGUCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 32107 0.66 0.390353
Target:  5'- uUGCUCAACGCCCuggccGCugccgaccucgacGCCCccgaaucccucaAGGCCGAa -3'
miRNA:   3'- cGCGAGUUGUGGG-----CG-------------UGGG------------UCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 31808 0.67 0.31533
Target:  5'- gGCGCagCAGUACauGCAauCCCAGGCCGAa -3'
miRNA:   3'- -CGCGa-GUUGUGggCGU--GGGUCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 31165 0.66 0.382256
Target:  5'- cGCGCcuuaUCGGCgACCUGCACgCCGGcucGCCGc -3'
miRNA:   3'- -CGCG----AGUUG-UGGGCGUG-GGUC---CGGUu -5'
26671 3' -59.8 NC_005808.1 + 29868 0.73 0.13119
Target:  5'- gGCGCg--GCACCCaGCACCaaCGGGCCGGg -3'
miRNA:   3'- -CGCGaguUGUGGG-CGUGG--GUCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 29562 0.72 0.148277
Target:  5'- cGUGCUCGGgguaucgcgucagguCGgCCGCGCCCAGGCg-- -3'
miRNA:   3'- -CGCGAGUU---------------GUgGGCGUGGGUCCGguu -5'
26671 3' -59.8 NC_005808.1 + 29433 0.76 0.076411
Target:  5'- cGCGCUC-GCACgUCGCGCCCAGGUg-- -3'
miRNA:   3'- -CGCGAGuUGUG-GGCGUGGGUCCGguu -5'
26671 3' -59.8 NC_005808.1 + 29408 0.68 0.277494
Target:  5'- gGCGUaCAACGCCgGCcaagggcGCCCAgcgcGGCCGAc -3'
miRNA:   3'- -CGCGaGUUGUGGgCG-------UGGGU----CCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 29139 0.71 0.172945
Target:  5'- aUGCcCGACA-CCGCGCCCgAGGCCGc -3'
miRNA:   3'- cGCGaGUUGUgGGCGUGGG-UCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 28395 0.66 0.39126
Target:  5'- -aGUUCGACGCCgGCGgCgCGGcGCCAGu -3'
miRNA:   3'- cgCGAGUUGUGGgCGUgG-GUC-CGGUU- -5'
26671 3' -59.8 NC_005808.1 + 27929 1 0.001084
Target:  5'- aGCGCUCAACACCCGC-CCCAGGCCAAg -3'
miRNA:   3'- -CGCGAGUUGUGGGCGuGGGUCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 27421 0.74 0.096132
Target:  5'- cGCGCcUGGCGCaCCGCGCCCGgcGGCCGc -3'
miRNA:   3'- -CGCGaGUUGUG-GGCGUGGGU--CCGGUu -5'
26671 3' -59.8 NC_005808.1 + 25804 0.67 0.299295
Target:  5'- cGCGCUCggUaucguugAUCUGCA-CCGGGCCGc -3'
miRNA:   3'- -CGCGAGuuG-------UGGGCGUgGGUCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 25325 0.7 0.203375
Target:  5'- gGCGCUCGuCGCCgGgAuugUCCAGGCCGg -3'
miRNA:   3'- -CGCGAGUuGUGGgCgU---GGGUCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 25079 0.67 0.339348
Target:  5'- uCGCcaccCAGCGCagCGCGCCCGGcGCCGu -3'
miRNA:   3'- cGCGa---GUUGUGg-GCGUGGGUC-CGGUu -5'
26671 3' -59.8 NC_005808.1 + 24664 0.66 0.382256
Target:  5'- gGUGUugUC-GCGCCCGC-CgCGGGCCAc -3'
miRNA:   3'- -CGCG--AGuUGUGGGCGuGgGUCCGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.