Results 41 - 60 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26671 | 3' | -59.8 | NC_005808.1 | + | 35882 | 0.69 | 0.238342 |
Target: 5'- cGUGCUCAaGCAgaUgCGCGCCCAGGaCAAg -3' miRNA: 3'- -CGCGAGU-UGU--GgGCGUGGGUCCgGUU- -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 35442 | 0.69 | 0.238342 |
Target: 5'- aGCGCcCGGC-CCUGguCAUCCAGGCCGc -3' miRNA: 3'- -CGCGaGUUGuGGGC--GUGGGUCCGGUu -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 11018 | 0.69 | 0.226159 |
Target: 5'- gGCGUcgaUgAACACCUGCuGCaCCGGGCCGu -3' miRNA: 3'- -CGCG---AgUUGUGGGCG-UG-GGUCCGGUu -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 25325 | 0.7 | 0.203375 |
Target: 5'- gGCGCUCGuCGCCgGgAuugUCCAGGCCGg -3' miRNA: 3'- -CGCGAGUuGUGGgCgU---GGGUCCGGUu -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 8104 | 0.7 | 0.203375 |
Target: 5'- aGCGUUUGAgGCCCuGCACCgCGcGGCCGg -3' miRNA: 3'- -CGCGAGUUgUGGG-CGUGG-GU-CCGGUu -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 10760 | 0.7 | 0.197998 |
Target: 5'- cGCGCUCGACuucgGCCCGCAguUCUucGGCCu- -3' miRNA: 3'- -CGCGAGUUG----UGGGCGU--GGGu-CCGGuu -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 8055 | 0.7 | 0.197998 |
Target: 5'- cCGUcCAugACgCGCGCCCAGGUCGc -3' miRNA: 3'- cGCGaGUugUGgGCGUGGGUCCGGUu -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 19157 | 0.71 | 0.177718 |
Target: 5'- cGCGCgaacCAUCCGCAUCCcGGCCGg -3' miRNA: 3'- -CGCGaguuGUGGGCGUGGGuCCGGUu -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 33891 | 0.69 | 0.220267 |
Target: 5'- gGUGCgCGACAUCCG-ACCC-GGCCAGu -3' miRNA: 3'- -CGCGaGUUGUGGGCgUGGGuCCGGUU- -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 7928 | 0.69 | 0.244637 |
Target: 5'- uGCGCUCGGCguccACCUuCACgCCAcGGCCAu -3' miRNA: 3'- -CGCGAGUUG----UGGGcGUG-GGU-CCGGUu -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 6332 | 0.69 | 0.25107 |
Target: 5'- cGCGUUCcgccccagccaaAGCGCCCG-GCCCgaAGGCCGGg -3' miRNA: 3'- -CGCGAG------------UUGUGGGCgUGGG--UCCGGUU- -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 29408 | 0.68 | 0.277494 |
Target: 5'- gGCGUaCAACGCCgGCcaagggcGCCCAgcgcGGCCGAc -3' miRNA: 3'- -CGCGaGUUGUGGgCG-------UGGGU----CCGGUU- -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 29139 | 0.71 | 0.172945 |
Target: 5'- aUGCcCGACA-CCGCGCCCgAGGCCGc -3' miRNA: 3'- cGCGaGUUGUgGGCGUGGG-UCCGGUu -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 32703 | 0.72 | 0.154979 |
Target: 5'- uGCaGCUCGACaucGCCaCGCGCCU-GGCCGAg -3' miRNA: 3'- -CG-CGAGUUG---UGG-GCGUGGGuCCGGUU- -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 33712 | 0.72 | 0.140272 |
Target: 5'- aGCGCcauUCAcaaugAUGCCCGCGCCCgcuucguggcgaccgAGGCCAAc -3' miRNA: 3'- -CGCG---AGU-----UGUGGGCGUGGG---------------UCCGGUU- -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 29868 | 0.73 | 0.13119 |
Target: 5'- gGCGCg--GCACCCaGCACCaaCGGGCCGGg -3' miRNA: 3'- -CGCGaguUGUGGG-CGUGG--GUCCGGUU- -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 8545 | 0.73 | 0.129005 |
Target: 5'- aCGCUCGACAgCCGCGCCgauggcgggcagcgaCAGGCgCGAc -3' miRNA: 3'- cGCGAGUUGUgGGCGUGG---------------GUCCG-GUU- -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 34458 | 0.76 | 0.068064 |
Target: 5'- aGCGC-CGACACCCGCacGCCCAcaaccaacgccGGCCGc -3' miRNA: 3'- -CGCGaGUUGUGGGCG--UGGGU-----------CCGGUu -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 12617 | 0.79 | 0.043934 |
Target: 5'- cCGUUCGACGgCUGCAUCCAGGCCGu -3' miRNA: 3'- cGCGAGUUGUgGGCGUGGGUCCGGUu -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 13139 | 0.66 | 0.39126 |
Target: 5'- cGCGCUUcguCGCCUggugccaggaGCACCUGGGCgCGAc -3' miRNA: 3'- -CGCGAGuu-GUGGG----------CGUGGGUCCG-GUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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