miRNA display CGI


Results 61 - 78 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26671 3' -59.8 NC_005808.1 + 14823 0.66 0.364666
Target:  5'- gGCGCU----GCCUuCGCCCAGGUCGAu -3'
miRNA:   3'- -CGCGAguugUGGGcGUGGGUCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 35534 0.66 0.364666
Target:  5'- cUGUUCAaacgacGCugCCGC-CCgAGGCCAu -3'
miRNA:   3'- cGCGAGU------UGugGGCGuGGgUCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 12626 0.66 0.355233
Target:  5'- cGCGCUCGGCAUcgCUGCugCCguccuuuggcgucGGGUCGu -3'
miRNA:   3'- -CGCGAGUUGUG--GGCGugGG-------------UCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 25079 0.67 0.339348
Target:  5'- uCGCcaccCAGCGCagCGCGCCCGGcGCCGu -3'
miRNA:   3'- cGCGa---GUUGUGg-GCGUGGGUC-CGGUu -5'
26671 3' -59.8 NC_005808.1 + 11909 0.67 0.338527
Target:  5'- uGCGCUgaccaGAUACuucaccgCCGUGCCCAGGCUGGa -3'
miRNA:   3'- -CGCGAg----UUGUG-------GGCGUGGGUCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 21326 0.67 0.31533
Target:  5'- cGgGCUUGAUGCCggccacCGCGCCCAGGUUg- -3'
miRNA:   3'- -CgCGAGUUGUGG------GCGUGGGUCCGGuu -5'
26671 3' -59.8 NC_005808.1 + 20013 0.67 0.306851
Target:  5'- uUGCUCGgcauggcGCGCCUGCAUCaCAGGCa-- -3'
miRNA:   3'- cGCGAGU-------UGUGGGCGUGG-GUCCGguu -5'
26671 3' -59.8 NC_005808.1 + 1294 0.67 0.300044
Target:  5'- cCGC-CcACACcgCCGCGCCCAGGgCGAc -3'
miRNA:   3'- cGCGaGuUGUG--GGCGUGGGUCCgGUU- -5'
26671 3' -59.8 NC_005808.1 + 37972 0.67 0.300044
Target:  5'- aGCGUggccCAGCAucCCCGCcgacaucaucGCCgAGGCCGAg -3'
miRNA:   3'- -CGCGa---GUUGU--GGGCG----------UGGgUCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 25804 0.67 0.299295
Target:  5'- cGCGCUCggUaucguugAUCUGCA-CCGGGCCGc -3'
miRNA:   3'- -CGCGAGuuG-------UGGGCGUgGGUCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 41970 0.68 0.2782
Target:  5'- cCGUUC---ACCCGCGCCgAGGCUGAg -3'
miRNA:   3'- cGCGAGuugUGGGCGUGGgUCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 39849 0.68 0.2782
Target:  5'- aGUGgUCGgcACGCCCGagcaGCgCCGGGCCGc -3'
miRNA:   3'- -CGCgAGU--UGUGGGCg---UG-GGUCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 4775 0.68 0.271205
Target:  5'- gGCGUUCGccCACaCUGCGCCCAGcacGCCGg -3'
miRNA:   3'- -CGCGAGUu-GUG-GGCGUGGGUC---CGGUu -5'
26671 3' -59.8 NC_005808.1 + 186 0.68 0.271205
Target:  5'- uCGCUgGGCACCgucaCGCugCCGGGCg-- -3'
miRNA:   3'- cGCGAgUUGUGG----GCGugGGUCCGguu -5'
26671 3' -59.8 NC_005808.1 + 32334 0.68 0.264352
Target:  5'- gGCGUccCGACAaCCGcCGCCCAGGUCGc -3'
miRNA:   3'- -CGCGa-GUUGUgGGC-GUGGGUCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 15588 0.68 0.264352
Target:  5'- cGCGCUgcgGAUGCaCCGCGCCaucGGCCAGg -3'
miRNA:   3'- -CGCGAg--UUGUG-GGCGUGGgu-CCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 788 0.68 0.258306
Target:  5'- aGCGUauuucagguuuccggCGACGCgCCGCGCCCAGcccuuGCCGAa -3'
miRNA:   3'- -CGCGa--------------GUUGUG-GGCGUGGGUC-----CGGUU- -5'
26671 3' -59.8 NC_005808.1 + 35977 0.77 0.066119
Target:  5'- cGCGCgCAGCGCCaCGCGCCCGcuGGUCAu -3'
miRNA:   3'- -CGCGaGUUGUGG-GCGUGGGU--CCGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.