miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26671 3' -59.8 NC_005808.1 + 27929 1 0.001084
Target:  5'- aGCGCUCAACACCCGC-CCCAGGCCAAg -3'
miRNA:   3'- -CGCGAGUUGUGGGCGuGGGUCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 12617 0.79 0.043934
Target:  5'- cCGUUCGACGgCUGCAUCCAGGCCGu -3'
miRNA:   3'- cGCGAGUUGUgGGCGUGGGUCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 35977 0.77 0.066119
Target:  5'- cGCGCgCAGCGCCaCGCGCCCGcuGGUCAu -3'
miRNA:   3'- -CGCGaGUUGUGG-GCGUGGGU--CCGGUu -5'
26671 3' -59.8 NC_005808.1 + 34458 0.76 0.068064
Target:  5'- aGCGC-CGACACCCGCacGCCCAcaaccaacgccGGCCGc -3'
miRNA:   3'- -CGCGaGUUGUGGGCG--UGGGU-----------CCGGUu -5'
26671 3' -59.8 NC_005808.1 + 29433 0.76 0.076411
Target:  5'- cGCGCUC-GCACgUCGCGCCCAGGUg-- -3'
miRNA:   3'- -CGCGAGuUGUG-GGCGUGGGUCCGguu -5'
26671 3' -59.8 NC_005808.1 + 27421 0.74 0.096132
Target:  5'- cGCGCcUGGCGCaCCGCGCCCGgcGGCCGc -3'
miRNA:   3'- -CGCGaGUUGUG-GGCGUGGGU--CCGGUu -5'
26671 3' -59.8 NC_005808.1 + 15744 0.74 0.11081
Target:  5'- uGCGCUCGACAUaCCGCACCUcguugccGCCAAu -3'
miRNA:   3'- -CGCGAGUUGUG-GGCGUGGGuc-----CGGUU- -5'
26671 3' -59.8 NC_005808.1 + 8545 0.73 0.129005
Target:  5'- aCGCUCGACAgCCGCGCCgauggcgggcagcgaCAGGCgCGAc -3'
miRNA:   3'- cGCGAGUUGUgGGCGUGG---------------GUCCG-GUU- -5'
26671 3' -59.8 NC_005808.1 + 13280 0.73 0.13119
Target:  5'- gGCGUcuuUCAGCGCCgauugcagCGCGCCgGGGCCGg -3'
miRNA:   3'- -CGCG---AGUUGUGG--------GCGUGGgUCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 29868 0.73 0.13119
Target:  5'- gGCGCg--GCACCCaGCACCaaCGGGCCGGg -3'
miRNA:   3'- -CGCGaguUGUGGG-CGUGG--GUCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 33712 0.72 0.140272
Target:  5'- aGCGCcauUCAcaaugAUGCCCGCGCCCgcuucguggcgaccgAGGCCAAc -3'
miRNA:   3'- -CGCG---AGU-----UGUGGGCGUGGG---------------UCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 29562 0.72 0.148277
Target:  5'- cGUGCUCGGgguaucgcgucagguCGgCCGCGCCCAGGCg-- -3'
miRNA:   3'- -CGCGAGUU---------------GUgGGCGUGGGUCCGguu -5'
26671 3' -59.8 NC_005808.1 + 23743 0.72 0.154979
Target:  5'- gGCGCgcagCAGCGCCaugccgGCGCcaCCGGGCCGAu -3'
miRNA:   3'- -CGCGa---GUUGUGGg-----CGUG--GGUCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 32703 0.72 0.154979
Target:  5'- uGCaGCUCGACaucGCCaCGCGCCU-GGCCGAg -3'
miRNA:   3'- -CG-CGAGUUG---UGG-GCGUGGGuCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 3714 0.71 0.159305
Target:  5'- cGCGCUCGugGCGCCCGUGCCguuCAcGCCGGu -3'
miRNA:   3'- -CGCGAGU--UGUGGGCGUGG---GUcCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 29139 0.71 0.172945
Target:  5'- aUGCcCGACA-CCGCGCCCgAGGCCGc -3'
miRNA:   3'- cGCGaGUUGUgGGCGUGGG-UCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 19157 0.71 0.177718
Target:  5'- cGCGCgaacCAUCCGCAUCCcGGCCGg -3'
miRNA:   3'- -CGCGaguuGUGGGCGUGGGuCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 42199 0.71 0.177718
Target:  5'- uGCuGCUCAACAgUCGCGCgCuGGCCGc -3'
miRNA:   3'- -CG-CGAGUUGUgGGCGUGgGuCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 6661 0.7 0.185599
Target:  5'- cGCGCUCAugGUCUGCGCCacgccgauguucaGGGCCGu -3'
miRNA:   3'- -CGCGAGUugUGGGCGUGGg------------UCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 7149 0.7 0.192747
Target:  5'- gGCGCUCAugACgUugaaGCCCAGGCCc- -3'
miRNA:   3'- -CGCGAGUugUGgGcg--UGGGUCCGGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.