Results 21 - 40 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
26671 | 3' | -59.8 | NC_005808.1 | + | 10760 | 0.7 | 0.197998 |
Target: 5'- cGCGCUCGACuucgGCCCGCAguUCUucGGCCu- -3' miRNA: 3'- -CGCGAGUUG----UGGGCGU--GGGu-CCGGuu -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 8055 | 0.7 | 0.197998 |
Target: 5'- cCGUcCAugACgCGCGCCCAGGUCGc -3' miRNA: 3'- cGCGaGUugUGgGCGUGGGUCCGGUu -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 34125 | 0.7 | 0.197998 |
Target: 5'- uCGCgUCGGCugCgGCAUCgCAGGCCAc -3' miRNA: 3'- cGCG-AGUUGugGgCGUGG-GUCCGGUu -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 7149 | 0.7 | 0.192747 |
Target: 5'- gGCGCUCAugACgUugaaGCCCAGGCCc- -3' miRNA: 3'- -CGCGAGUugUGgGcg--UGGGUCCGGuu -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 6661 | 0.7 | 0.185599 |
Target: 5'- cGCGCUCAugGUCUGCGCCacgccgauguucaGGGCCGu -3' miRNA: 3'- -CGCGAGUugUGGGCGUGGg------------UCCGGUu -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 6332 | 0.69 | 0.25107 |
Target: 5'- cGCGUUCcgccccagccaaAGCGCCCG-GCCCgaAGGCCGGg -3' miRNA: 3'- -CGCGAG------------UUGUGGGCgUGGG--UCCGGUU- -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 7928 | 0.69 | 0.244637 |
Target: 5'- uGCGCUCGGCguccACCUuCACgCCAcGGCCAu -3' miRNA: 3'- -CGCGAGUUG----UGGGcGUG-GGU-CCGGUu -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 33891 | 0.69 | 0.220267 |
Target: 5'- gGUGCgCGACAUCCG-ACCC-GGCCAGu -3' miRNA: 3'- -CGCGaGUUGUGGGCgUGGGuCCGGUU- -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 35354 | 0.69 | 0.25107 |
Target: 5'- gGCGacaUCG--GCCCGCGCCaguGGCCGAa -3' miRNA: 3'- -CGCg--AGUugUGGGCGUGGgu-CCGGUU- -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 35882 | 0.69 | 0.238342 |
Target: 5'- cGUGCUCAaGCAgaUgCGCGCCCAGGaCAAg -3' miRNA: 3'- -CGCGAGU-UGU--GgGCGUGGGUCCgGUU- -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 35442 | 0.69 | 0.238342 |
Target: 5'- aGCGCcCGGC-CCUGguCAUCCAGGCCGc -3' miRNA: 3'- -CGCGaGUUGuGGGC--GUGGGUCCGGUu -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 11018 | 0.69 | 0.226159 |
Target: 5'- gGCGUcgaUgAACACCUGCuGCaCCGGGCCGu -3' miRNA: 3'- -CGCG---AgUUGUGGGCG-UG-GGUCCGGUu -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 39849 | 0.68 | 0.2782 |
Target: 5'- aGUGgUCGgcACGCCCGagcaGCgCCGGGCCGc -3' miRNA: 3'- -CGCgAGU--UGUGGGCg---UG-GGUCCGGUu -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 29408 | 0.68 | 0.277494 |
Target: 5'- gGCGUaCAACGCCgGCcaagggcGCCCAgcgcGGCCGAc -3' miRNA: 3'- -CGCGaGUUGUGGgCG-------UGGGU----CCGGUU- -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 1754 | 0.68 | 0.2782 |
Target: 5'- gGCGgUCAugGCcgGCCUGCGCCUggcgcgucGGGCCGAu -3' miRNA: 3'- -CGCgAGU--UG--UGGGCGUGGG--------UCCGGUU- -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 12996 | 0.68 | 0.2782 |
Target: 5'- gGCGCUgGACaacuggcaaACCgCGCGCCUGGGCgCGg -3' miRNA: 3'- -CGCGAgUUG---------UGG-GCGUGGGUCCG-GUu -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 34618 | 0.68 | 0.285337 |
Target: 5'- aGCGCggCGACAuggaaaccacgaUgCGCGCCgAGGCCAc -3' miRNA: 3'- -CGCGa-GUUGU------------GgGCGUGGgUCCGGUu -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 2842 | 0.68 | 0.292618 |
Target: 5'- cGCGCagCGGCGCCaGCACCagcgagGGGCCu- -3' miRNA: 3'- -CGCGa-GUUGUGGgCGUGGg-----UCCGGuu -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 41970 | 0.68 | 0.2782 |
Target: 5'- cCGUUC---ACCCGCGCCgAGGCUGAg -3' miRNA: 3'- cGCGAGuugUGGGCGUGGgUCCGGUU- -5' |
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26671 | 3' | -59.8 | NC_005808.1 | + | 4775 | 0.68 | 0.271205 |
Target: 5'- gGCGUUCGccCACaCUGCGCCCAGcacGCCGg -3' miRNA: 3'- -CGCGAGUu-GUG-GGCGUGGGUC---CGGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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