miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26671 3' -59.8 NC_005808.1 + 25079 0.67 0.339348
Target:  5'- uCGCcaccCAGCGCagCGCGCCCGGcGCCGu -3'
miRNA:   3'- cGCGa---GUUGUGg-GCGUGGGUC-CGGUu -5'
26671 3' -59.8 NC_005808.1 + 11909 0.67 0.338527
Target:  5'- uGCGCUgaccaGAUACuucaccgCCGUGCCCAGGCUGGa -3'
miRNA:   3'- -CGCGAg----UUGUG-------GGCGUGGGUCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 40582 0.67 0.331197
Target:  5'- uGCGCgacuuCGCCagcgaGCGCCUGGGCCu- -3'
miRNA:   3'- -CGCGaguu-GUGGg----CGUGGGUCCGGuu -5'
26671 3' -59.8 NC_005808.1 + 23153 0.67 0.323191
Target:  5'- gGCGUgCAGCccgagaaguCCCGCACCgugCAGGUCAAg -3'
miRNA:   3'- -CGCGaGUUGu--------GGGCGUGG---GUCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 31808 0.67 0.31533
Target:  5'- gGCGCagCAGUACauGCAauCCCAGGCCGAa -3'
miRNA:   3'- -CGCGa-GUUGUGggCGU--GGGUCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 42137 0.67 0.31533
Target:  5'- cCGCgaCAGCGCCCGCAagCuGGCCGc -3'
miRNA:   3'- cGCGa-GUUGUGGGCGUggGuCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 21326 0.67 0.31533
Target:  5'- cGgGCUUGAUGCCggccacCGCGCCCAGGUUg- -3'
miRNA:   3'- -CgCGAGUUGUGG------GCGUGGGUCCGGuu -5'
26671 3' -59.8 NC_005808.1 + 19094 0.67 0.307615
Target:  5'- cGCGCUCGcggaACugCCGCAggucgagauuCCCAcGGCgCAc -3'
miRNA:   3'- -CGCGAGU----UGugGGCGU----------GGGU-CCG-GUu -5'
26671 3' -59.8 NC_005808.1 + 20013 0.67 0.306851
Target:  5'- uUGCUCGgcauggcGCGCCUGCAUCaCAGGCa-- -3'
miRNA:   3'- cGCGAGU-------UGUGGGCGUGG-GUCCGguu -5'
26671 3' -59.8 NC_005808.1 + 37972 0.67 0.300044
Target:  5'- aGCGUggccCAGCAucCCCGCcgacaucaucGCCgAGGCCGAg -3'
miRNA:   3'- -CGCGa---GUUGU--GGGCG----------UGGgUCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 36984 0.67 0.300044
Target:  5'- cGCGC-CAcGCGCgaaaCGCACCCcgccgaguGGGCCAAa -3'
miRNA:   3'- -CGCGaGU-UGUGg---GCGUGGG--------UCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 1294 0.67 0.300044
Target:  5'- cCGC-CcACACcgCCGCGCCCAGGgCGAc -3'
miRNA:   3'- cGCGaGuUGUG--GGCGUGGGUCCgGUU- -5'
26671 3' -59.8 NC_005808.1 + 25804 0.67 0.299295
Target:  5'- cGCGCUCggUaucguugAUCUGCA-CCGGGCCGc -3'
miRNA:   3'- -CGCGAGuuG-------UGGGCGUgGGUCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 2842 0.68 0.292618
Target:  5'- cGCGCagCGGCGCCaGCACCagcgagGGGCCu- -3'
miRNA:   3'- -CGCGa-GUUGUGGgCGUGGg-----UCCGGuu -5'
26671 3' -59.8 NC_005808.1 + 34618 0.68 0.285337
Target:  5'- aGCGCggCGACAuggaaaccacgaUgCGCGCCgAGGCCAc -3'
miRNA:   3'- -CGCGa-GUUGU------------GgGCGUGGgUCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 41970 0.68 0.2782
Target:  5'- cCGUUC---ACCCGCGCCgAGGCUGAg -3'
miRNA:   3'- cGCGAGuugUGGGCGUGGgUCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 39849 0.68 0.2782
Target:  5'- aGUGgUCGgcACGCCCGagcaGCgCCGGGCCGc -3'
miRNA:   3'- -CGCgAGU--UGUGGGCg---UG-GGUCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 12996 0.68 0.2782
Target:  5'- gGCGCUgGACaacuggcaaACCgCGCGCCUGGGCgCGg -3'
miRNA:   3'- -CGCGAgUUG---------UGG-GCGUGGGUCCG-GUu -5'
26671 3' -59.8 NC_005808.1 + 1754 0.68 0.2782
Target:  5'- gGCGgUCAugGCcgGCCUGCGCCUggcgcgucGGGCCGAu -3'
miRNA:   3'- -CGCgAGU--UG--UGGGCGUGGG--------UCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 29408 0.68 0.277494
Target:  5'- gGCGUaCAACGCCgGCcaagggcGCCCAgcgcGGCCGAc -3'
miRNA:   3'- -CGCGaGUUGUGGgCG-------UGGGU----CCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.