miRNA display CGI


Results 41 - 60 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26671 3' -59.8 NC_005808.1 + 35354 0.69 0.25107
Target:  5'- gGCGacaUCG--GCCCGCGCCaguGGCCGAa -3'
miRNA:   3'- -CGCg--AGUugUGGGCGUGGgu-CCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 35882 0.69 0.238342
Target:  5'- cGUGCUCAaGCAgaUgCGCGCCCAGGaCAAg -3'
miRNA:   3'- -CGCGAGU-UGU--GgGCGUGGGUCCgGUU- -5'
26671 3' -59.8 NC_005808.1 + 35442 0.69 0.238342
Target:  5'- aGCGCcCGGC-CCUGguCAUCCAGGCCGc -3'
miRNA:   3'- -CGCGaGUUGuGGGC--GUGGGUCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 11018 0.69 0.226159
Target:  5'- gGCGUcgaUgAACACCUGCuGCaCCGGGCCGu -3'
miRNA:   3'- -CGCG---AgUUGUGGGCG-UG-GGUCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 25325 0.7 0.203375
Target:  5'- gGCGCUCGuCGCCgGgAuugUCCAGGCCGg -3'
miRNA:   3'- -CGCGAGUuGUGGgCgU---GGGUCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 8104 0.7 0.203375
Target:  5'- aGCGUUUGAgGCCCuGCACCgCGcGGCCGg -3'
miRNA:   3'- -CGCGAGUUgUGGG-CGUGG-GU-CCGGUu -5'
26671 3' -59.8 NC_005808.1 + 10760 0.7 0.197998
Target:  5'- cGCGCUCGACuucgGCCCGCAguUCUucGGCCu- -3'
miRNA:   3'- -CGCGAGUUG----UGGGCGU--GGGu-CCGGuu -5'
26671 3' -59.8 NC_005808.1 + 2842 0.68 0.292618
Target:  5'- cGCGCagCGGCGCCaGCACCagcgagGGGCCu- -3'
miRNA:   3'- -CGCGa-GUUGUGGgCGUGGg-----UCCGGuu -5'
26671 3' -59.8 NC_005808.1 + 19094 0.67 0.307615
Target:  5'- cGCGCUCGcggaACugCCGCAggucgagauuCCCAcGGCgCAc -3'
miRNA:   3'- -CGCGAGU----UGugGGCGU----------GGGU-CCG-GUu -5'
26671 3' -59.8 NC_005808.1 + 31808 0.67 0.31533
Target:  5'- gGCGCagCAGUACauGCAauCCCAGGCCGAa -3'
miRNA:   3'- -CGCGa-GUUGUGggCGU--GGGUCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 42137 0.67 0.31533
Target:  5'- cCGCgaCAGCGCCCGCAagCuGGCCGc -3'
miRNA:   3'- cGCGa-GUUGUGGGCGUggGuCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 23153 0.67 0.323191
Target:  5'- gGCGUgCAGCccgagaaguCCCGCACCgugCAGGUCAAg -3'
miRNA:   3'- -CGCGaGUUGu--------GGGCGUGG---GUCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 40582 0.67 0.331197
Target:  5'- uGCGCgacuuCGCCagcgaGCGCCUGGGCCu- -3'
miRNA:   3'- -CGCGaguu-GUGGg----CGUGGGUCCGGuu -5'
26671 3' -59.8 NC_005808.1 + 5353 0.67 0.339348
Target:  5'- cGCGCUgCGugGCcgccugcaCCGCGCCCAGGg--- -3'
miRNA:   3'- -CGCGA-GUugUG--------GGCGUGGGUCCgguu -5'
26671 3' -59.8 NC_005808.1 + 12438 0.66 0.347644
Target:  5'- gGCGC-CAACugCCGCugauguCCgacgcggugCAGGCCGg -3'
miRNA:   3'- -CGCGaGUUGugGGCGu-----GG---------GUCCGGUu -5'
26671 3' -59.8 NC_005808.1 + 997 0.66 0.356083
Target:  5'- uCGCcCGcUGCCCGCGCCaCuGGCCGGg -3'
miRNA:   3'- cGCGaGUuGUGGGCGUGG-GuCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 18420 0.66 0.356083
Target:  5'- cGCGCUCAuggacACGCCgaagcgCGCAgCCgucgaggcgcuGGGCCAGg -3'
miRNA:   3'- -CGCGAGU-----UGUGG------GCGUgGG-----------UCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 15145 0.66 0.364666
Target:  5'- cGCGCUgGcAUACCaGCGCCaGGGCCu- -3'
miRNA:   3'- -CGCGAgU-UGUGGgCGUGGgUCCGGuu -5'
26671 3' -59.8 NC_005808.1 + 33384 0.66 0.37339
Target:  5'- cGCGCcgCAGaacguGCgCCGCGCCgccgagCAGGCCAAc -3'
miRNA:   3'- -CGCGa-GUUg----UG-GGCGUGG------GUCCGGUU- -5'
26671 3' -59.8 NC_005808.1 + 36184 0.66 0.382256
Target:  5'- gGCGCcaaCGACAUgggCCGCGacuacaCCGGGCCGg -3'
miRNA:   3'- -CGCGa--GUUGUG---GGCGUg-----GGUCCGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.