miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26671 5' -57.7 NC_005808.1 + 33315 0.66 0.475201
Target:  5'- aGUCAA--UGCGCAgCCGGUGuaCCGGGc -3'
miRNA:   3'- aUAGUUagACGCGU-GGCCGC--GGCCUu -5'
26671 5' -57.7 NC_005808.1 + 27963 1.04 0.000672
Target:  5'- gUAUCAAUCUGCGCACCGGCGCCGGAAg -3'
miRNA:   3'- -AUAGUUAGACGCGUGGCCGCGGCCUU- -5'
26671 5' -57.7 NC_005808.1 + 11957 0.67 0.377826
Target:  5'- aAUUggUCUGCGC-CCucauuGCGCCGGc- -3'
miRNA:   3'- aUAGuuAGACGCGuGGc----CGCGGCCuu -5'
26671 5' -57.7 NC_005808.1 + 7554 0.67 0.386948
Target:  5'- -cUCGAUCUGCGgcgcCACCGGC-UUGGAc -3'
miRNA:   3'- auAGUUAGACGC----GUGGCCGcGGCCUu -5'
26671 5' -57.7 NC_005808.1 + 7983 0.67 0.396214
Target:  5'- uUGUCAggCaGCaGCACCacGGCGUCGGAc -3'
miRNA:   3'- -AUAGUuaGaCG-CGUGG--CCGCGGCCUu -5'
26671 5' -57.7 NC_005808.1 + 12989 0.67 0.415169
Target:  5'- --------aGCGC-CCGGCGCUGGAc -3'
miRNA:   3'- auaguuagaCGCGuGGCCGCGGCCUu -5'
26671 5' -57.7 NC_005808.1 + 18615 0.67 0.415169
Target:  5'- --cCAGUCUGUGCGCCGaauacGCGCauGAAu -3'
miRNA:   3'- auaGUUAGACGCGUGGC-----CGCGgcCUU- -5'
26671 5' -57.7 NC_005808.1 + 25309 0.66 0.444618
Target:  5'- -------aUGCGCGCCcgcGGCGCCGGc- -3'
miRNA:   3'- auaguuagACGCGUGG---CCGCGGCCuu -5'
26671 5' -57.7 NC_005808.1 + 19929 0.66 0.454691
Target:  5'- --gCAA-CUGCGCACCGaGCGCgaaagcUGGAu -3'
miRNA:   3'- auaGUUaGACGCGUGGC-CGCG------GCCUu -5'
26671 5' -57.7 NC_005808.1 + 21600 0.66 0.464888
Target:  5'- gGUC-AUCUGCGgAUUGGUGCCGu-- -3'
miRNA:   3'- aUAGuUAGACGCgUGGCCGCGGCcuu -5'
26671 5' -57.7 NC_005808.1 + 30050 0.66 0.454691
Target:  5'- --cCAcgUauuCGCACUGGUGCCGGAAa -3'
miRNA:   3'- auaGUuaGac-GCGUGGCCGCGGCCUU- -5'
26671 5' -57.7 NC_005808.1 + 12603 0.66 0.43467
Target:  5'- gAUgAAUUUGCGCA-UGGCGCCGa-- -3'
miRNA:   3'- aUAgUUAGACGCGUgGCCGCGGCcuu -5'
26671 5' -57.7 NC_005808.1 + 13294 0.72 0.192552
Target:  5'- --cCGAUUgcaGCGCGCCGGgGCCGGc- -3'
miRNA:   3'- auaGUUAGa--CGCGUGGCCgCGGCCuu -5'
26671 5' -57.7 NC_005808.1 + 13802 0.71 0.203397
Target:  5'- gGUCAGUUUGCGCGCCuGUGCCu--- -3'
miRNA:   3'- aUAGUUAGACGCGUGGcCGCGGccuu -5'
26671 5' -57.7 NC_005808.1 + 23411 0.69 0.286578
Target:  5'- -cUUGAUgaGCGCGCCGGUcagugcgacgccgGCCGGGAu -3'
miRNA:   3'- auAGUUAgaCGCGUGGCCG-------------CGGCCUU- -5'
26671 5' -57.7 NC_005808.1 + 6267 0.69 0.287317
Target:  5'- gGUUGAUCUGCGCGCUGGgcagGCCGa-- -3'
miRNA:   3'- aUAGUUAGACGCGUGGCCg---CGGCcuu -5'
26671 5' -57.7 NC_005808.1 + 14528 0.69 0.287317
Target:  5'- aAUCAGcca-CGuCGCCGGCGCCGGAc -3'
miRNA:   3'- aUAGUUagacGC-GUGGCCGCGGCCUu -5'
26671 5' -57.7 NC_005808.1 + 22784 0.69 0.287317
Target:  5'- gGUCAAcgccCUGCGgGCCGGUcagcaugguGCCGGAc -3'
miRNA:   3'- aUAGUUa---GACGCgUGGCCG---------CGGCCUu -5'
26671 5' -57.7 NC_005808.1 + 28316 0.69 0.294791
Target:  5'- -----cUCgGCGCGCuCGGCGUCGGAc -3'
miRNA:   3'- auaguuAGaCGCGUG-GCCGCGGCCUu -5'
26671 5' -57.7 NC_005808.1 + 7777 0.67 0.372422
Target:  5'- --gCGAUCUGCGCcggcguccacccuucGCCgcccagcaGGCGCUGGAu -3'
miRNA:   3'- auaGUUAGACGCG---------------UGG--------CCGCGGCCUu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.