Results 61 - 80 of 103 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 34944 | 0.69 | 0.279352 |
Target: 5'- gGCGCGU-GUaCGGCAag-GA-GCCGGCg -3' miRNA: 3'- -CGCGCGuCA-GCCGUgaaCUcCGGCCG- -5' |
|||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 7749 | 0.69 | 0.275185 |
Target: 5'- cUGCGCAGUcagcgauugcagcacCGGCGCgaucuGcGCCGGCg -3' miRNA: 3'- cGCGCGUCA---------------GCCGUGaacu-C-CGGCCG- -5' |
|||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 23743 | 0.69 | 0.293604 |
Target: 5'- gGCGCGCAG-CaGCGCcau--GCCGGCg -3' miRNA: 3'- -CGCGCGUCaGcCGUGaacucCGGCCG- -5' |
|||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 22060 | 0.69 | 0.293604 |
Target: 5'- cGCGCuugcucgggucGCGGUCGGCGCgc--GGCUcgauGGCg -3' miRNA: 3'- -CGCG-----------CGUCAGCCGUGaacuCCGG----CCG- -5' |
|||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 17643 | 0.69 | 0.286408 |
Target: 5'- cGUGCgGCAGUaCGGCcacgauCUUGAuGGCguCGGCg -3' miRNA: 3'- -CGCG-CGUCA-GCCGu-----GAACU-CCG--GCCG- -5' |
|||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 25488 | 0.69 | 0.284277 |
Target: 5'- gGCGCGCucgugcuuggucagGGUCaGGCcCgcgaUGAGGUCGGUu -3' miRNA: 3'- -CGCGCG--------------UCAG-CCGuGa---ACUCCGGCCG- -5' |
|||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 19349 | 0.69 | 0.259015 |
Target: 5'- gGCGC-CAGgCGGCggaauuGCcgUUGAGGUCGGCc -3' miRNA: 3'- -CGCGcGUCaGCCG------UG--AACUCCGGCCG- -5' |
|||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 28188 | 0.69 | 0.272435 |
Target: 5'- aCGCccaGCAGgugCGGCGcCUUGuccAGGUCGGCc -3' miRNA: 3'- cGCG---CGUCa--GCCGU-GAAC---UCCGGCCG- -5' |
|||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 27609 | 0.69 | 0.272435 |
Target: 5'- -gGCGUGGUCGucGCcCUUGAcgaugGGCCGGUg -3' miRNA: 3'- cgCGCGUCAGC--CGuGAACU-----CCGGCCG- -5' |
|||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 26059 | 0.7 | 0.25251 |
Target: 5'- gGCGCGCuccaugcgcUCGGCgaACUcGGGGCgGGCc -3' miRNA: 3'- -CGCGCGuc-------AGCCG--UGAaCUCCGgCCG- -5' |
|||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 24444 | 0.7 | 0.221983 |
Target: 5'- cGCGCGCGGccUCGGCGacaUUGAcGCCGa- -3' miRNA: 3'- -CGCGCGUC--AGCCGUg--AACUcCGGCcg -5' |
|||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 18170 | 0.7 | 0.25251 |
Target: 5'- cCGCGCg--CGGCACcgacaaaucGGGCCGGCu -3' miRNA: 3'- cGCGCGucaGCCGUGaac------UCCGGCCG- -5' |
|||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 11558 | 0.7 | 0.251866 |
Target: 5'- uCGCGCAcGUUGGCccGCgcGAuugccucGGCCGGCa -3' miRNA: 3'- cGCGCGU-CAGCCG--UGaaCU-------CCGGCCG- -5' |
|||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 10196 | 0.7 | 0.239287 |
Target: 5'- gGCGCGCGGcuuuuuuUCGGUGCUggcuuccugcUGGgcGGCCGGg -3' miRNA: 3'- -CGCGCGUC-------AGCCGUGA----------ACU--CCGGCCg -5' |
|||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 29313 | 0.71 | 0.207386 |
Target: 5'- gGCGCGCuGcaaUCGGCGCUgaaagacgccaaggaUGGcaacuGGCUGGCg -3' miRNA: 3'- -CGCGCGuC---AGCCGUGA---------------ACU-----CCGGCCG- -5' |
|||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 33055 | 0.71 | 0.189555 |
Target: 5'- cGCGUGCuGUCGuGCGCUUcaucGGGUCGcGCa -3' miRNA: 3'- -CGCGCGuCAGC-CGUGAAc---UCCGGC-CG- -5' |
|||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 18028 | 0.71 | 0.216268 |
Target: 5'- uGCGgGUucuuGUCGGCgggcuGCUUGGGGgccuuaCCGGCg -3' miRNA: 3'- -CGCgCGu---CAGCCG-----UGAACUCC------GGCCG- -5' |
|||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 23935 | 0.71 | 0.216268 |
Target: 5'- gGCGUGaUGGUCaGGCGCcgcccggcGAGGUCGGCa -3' miRNA: 3'- -CGCGC-GUCAG-CCGUGaa------CUCCGGCCG- -5' |
|||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 4250 | 0.71 | 0.205215 |
Target: 5'- -gGCGUAGUCGGUGCcgGccgucAGcGCCGGCa -3' miRNA: 3'- cgCGCGUCAGCCGUGaaC-----UC-CGGCCG- -5' |
|||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 4683 | 0.71 | 0.194655 |
Target: 5'- aGCGCGCcGgauagcgCGGCGagaauGGCCGGCa -3' miRNA: 3'- -CGCGCGuCa------GCCGUgaacuCCGGCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home