Results 41 - 60 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 23743 | 0.69 | 0.293604 |
Target: 5'- gGCGCGCAG-CaGCGCcau--GCCGGCg -3' miRNA: 3'- -CGCGCGUCaGcCGUGaacucCGGCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 5559 | 0.69 | 0.257703 |
Target: 5'- aCGCGCA--UGGCuucgaugucGAGGCCGGCa -3' miRNA: 3'- cGCGCGUcaGCCGugaa-----CUCCGGCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 2841 | 0.69 | 0.262984 |
Target: 5'- aCGCGCAG-CGGCGCcagcaccagcgaGGGGCCuGGUu -3' miRNA: 3'- cGCGCGUCaGCCGUGaa----------CUCCGG-CCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 22060 | 0.69 | 0.293604 |
Target: 5'- cGCGCuugcucgggucGCGGUCGGCGCgc--GGCUcgauGGCg -3' miRNA: 3'- -CGCG-----------CGUCAGCCGUGaacuCCGG----CCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 17643 | 0.69 | 0.286408 |
Target: 5'- cGUGCgGCAGUaCGGCcacgauCUUGAuGGCguCGGCg -3' miRNA: 3'- -CGCG-CGUCA-GCCGu-----GAACU-CCG--GCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 7749 | 0.69 | 0.275185 |
Target: 5'- cUGCGCAGUcagcgauugcagcacCGGCGCgaucuGcGCCGGCg -3' miRNA: 3'- cGCGCGUCA---------------GCCGUGaacu-C-CGGCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 28188 | 0.69 | 0.272435 |
Target: 5'- aCGCccaGCAGgugCGGCGcCUUGuccAGGUCGGCc -3' miRNA: 3'- cGCG---CGUCa--GCCGU-GAAC---UCCGGCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 14742 | 0.69 | 0.26365 |
Target: 5'- aGCGCggacacguucuugaGCAG-CGGCGC----GGCCGGCg -3' miRNA: 3'- -CGCG--------------CGUCaGCCGUGaacuCCGGCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 27609 | 0.69 | 0.272435 |
Target: 5'- -gGCGUGGUCGucGCcCUUGAcgaugGGCCGGUg -3' miRNA: 3'- cgCGCGUCAGC--CGuGAACU-----CCGGCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 14676 | 0.68 | 0.308416 |
Target: 5'- gGUGCgGguGUUGaGCGCUUGAaGCCcGGCc -3' miRNA: 3'- -CGCG-CguCAGC-CGUGAACUcCGG-CCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 12373 | 0.68 | 0.316034 |
Target: 5'- uGCGCGuCGGUCGGCGagucGAuGCCuGCg -3' miRNA: 3'- -CGCGC-GUCAGCCGUgaa-CUcCGGcCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 4800 | 0.68 | 0.323793 |
Target: 5'- aCGC-CGGcUGGCGCUgcggGAuugcuGGCCGGCg -3' miRNA: 3'- cGCGcGUCaGCCGUGAa---CU-----CCGGCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 23289 | 0.68 | 0.326936 |
Target: 5'- uGCGCcacgaaugccuguuuGCGGcCGGCACU---GGCCGGg -3' miRNA: 3'- -CGCG---------------CGUCaGCCGUGAacuCCGGCCg -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 25267 | 0.68 | 0.330896 |
Target: 5'- uCGCGCuGcUCGGuCACUucgucgaaugccuUGAGGUCGuGCg -3' miRNA: 3'- cGCGCGuC-AGCC-GUGA-------------ACUCCGGC-CG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 23924 | 0.68 | 0.323793 |
Target: 5'- cGCGUGguGUaacaGGCcg--GGGGCgGGCg -3' miRNA: 3'- -CGCGCguCAg---CCGugaaCUCCGgCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 30036 | 0.68 | 0.331692 |
Target: 5'- cCGCGCA----GCGC--GAGGCCGGCa -3' miRNA: 3'- cGCGCGUcagcCGUGaaCUCCGGCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 18835 | 0.68 | 0.316034 |
Target: 5'- cGCgGCGCA-UCGGCcCggUGGcGCCGGCa -3' miRNA: 3'- -CG-CGCGUcAGCCGuGa-ACUcCGGCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 30309 | 0.68 | 0.30094 |
Target: 5'- cGC-CGUAGcCGGCACgcuGGGCCaGCa -3' miRNA: 3'- -CGcGCGUCaGCCGUGaacUCCGGcCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 5432 | 0.68 | 0.339733 |
Target: 5'- -gGCGCGGauggCGGCGUgggcGAGGUCGGUa -3' miRNA: 3'- cgCGCGUCa---GCCGUGaa--CUCCGGCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 13290 | 0.68 | 0.331692 |
Target: 5'- aGCGCcgauuGCAG-C-GCGCc-GGGGCCGGCg -3' miRNA: 3'- -CGCG-----CGUCaGcCGUGaaCUCCGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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