Results 81 - 100 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 33055 | 0.71 | 0.189555 |
Target: 5'- cGCGUGCuGUCGuGCGCUUcaucGGGUCGcGCa -3' miRNA: 3'- -CGCGCGuCAGC-CGUGAAc---UCCGGC-CG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 13255 | 0.71 | 0.189555 |
Target: 5'- gGCGCGUGGuUCGaGgACUU--GGCCGGCg -3' miRNA: 3'- -CGCGCGUC-AGC-CgUGAAcuCCGGCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 8423 | 0.72 | 0.184573 |
Target: 5'- cGUGCGCuuGUcuaCGGC-CUUGAGGCUuuGGCc -3' miRNA: 3'- -CGCGCGu-CA---GCCGuGAACUCCGG--CCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 4504 | 0.72 | 0.184573 |
Target: 5'- uGCGCGCGGcgccacaGGCGCUUGAGcGCaucGCa -3' miRNA: 3'- -CGCGCGUCag-----CCGUGAACUC-CGgc-CG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 27029 | 0.72 | 0.183101 |
Target: 5'- aGCGCGUcGUcacugaCGGCGCcauugaccuggacgUgGAGGCCGGCa -3' miRNA: 3'- -CGCGCGuCA------GCCGUG--------------AaCUCCGGCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 14332 | 0.72 | 0.174955 |
Target: 5'- aGCGCGCGGUCauGGUGCgcaacauggUGAGcCUGGCg -3' miRNA: 3'- -CGCGCGUCAG--CCGUGa--------ACUCcGGCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 19370 | 0.72 | 0.161366 |
Target: 5'- -gGCGCGGUCGGUggccGAGGCCgaGGCc -3' miRNA: 3'- cgCGCGUCAGCCGugaaCUCCGG--CCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 32064 | 0.73 | 0.157051 |
Target: 5'- uGCGCGUGG-CGGCGgaaagcGuGGCCGGCg -3' miRNA: 3'- -CGCGCGUCaGCCGUgaa---CuCCGGCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 19761 | 0.73 | 0.14082 |
Target: 5'- cGCGCGCuGUCGGCugUcGGcaGCgCGGCg -3' miRNA: 3'- -CGCGCGuCAGCCGugAaCUc-CG-GCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 34240 | 0.74 | 0.133293 |
Target: 5'- -aGCGCGG-CGGCGCagGAGGUacUGGCa -3' miRNA: 3'- cgCGCGUCaGCCGUGaaCUCCG--GCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 9321 | 0.74 | 0.122697 |
Target: 5'- gGCgGCGCAcGUCGGCGCggcGGGCggCGGCa -3' miRNA: 3'- -CG-CGCGU-CAGCCGUGaacUCCG--GCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 2233 | 0.74 | 0.119342 |
Target: 5'- cGCGCaGCAGgCGGCGCgu--GGCCGcGCa -3' miRNA: 3'- -CGCG-CGUCaGCCGUGaacuCCGGC-CG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 1463 | 0.74 | 0.116072 |
Target: 5'- -gGCGCGGUCGGCGgcCUccUGgcAGGCCGGg -3' miRNA: 3'- cgCGCGUCAGCCGU--GA--AC--UCCGGCCg -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 10915 | 0.75 | 0.112886 |
Target: 5'- uGCuGCaGCAGUuacUGGUGCUUGuGGCCGGUg -3' miRNA: 3'- -CG-CG-CGUCA---GCCGUGAACuCCGGCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 5241 | 0.75 | 0.109783 |
Target: 5'- uCGCGCAGUucggcCGGCAggUcGGGGUCGGCa -3' miRNA: 3'- cGCGCGUCA-----GCCGUgaA-CUCCGGCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 244 | 0.75 | 0.106164 |
Target: 5'- aGgGCcgGCGGUagcgaauccccaGGCGCUUGAGGCaCGGCg -3' miRNA: 3'- -CgCG--CGUCAg-----------CCGUGAACUCCG-GCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 8662 | 0.75 | 0.098151 |
Target: 5'- uCGCGCGGUCGGCAUUgcguGCCGcGCg -3' miRNA: 3'- cGCGCGUCAGCCGUGAacucCGGC-CG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 17305 | 0.76 | 0.09543 |
Target: 5'- gGCGCGCAuccauucCGGCAUaUG-GGCCGGCu -3' miRNA: 3'- -CGCGCGUca-----GCCGUGaACuCCGGCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 29598 | 0.76 | 0.093832 |
Target: 5'- gGCGCGCGGUuugcCaguuguccagcgccgGGCGCUUGuGGCCGGg -3' miRNA: 3'- -CGCGCGUCA----G---------------CCGUGAACuCCGGCCg -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 18440 | 0.76 | 0.08769 |
Target: 5'- aGCGCGCAGccgucgaGGCGCU--GGGCCaGGCg -3' miRNA: 3'- -CGCGCGUCag-----CCGUGAacUCCGG-CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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