miRNA display CGI


Results 61 - 80 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26672 5' -59.5 NC_005808.1 + 23743 0.69 0.293604
Target:  5'- gGCGCGCAG-CaGCGCcau--GCCGGCg -3'
miRNA:   3'- -CGCGCGUCaGcCGUGaacucCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 23924 0.68 0.323793
Target:  5'- cGCGUGguGUaacaGGCcg--GGGGCgGGCg -3'
miRNA:   3'- -CGCGCguCAg---CCGugaaCUCCGgCCG- -5'
26672 5' -59.5 NC_005808.1 + 23935 0.71 0.216268
Target:  5'- gGCGUGaUGGUCaGGCGCcgcccggcGAGGUCGGCa -3'
miRNA:   3'- -CGCGC-GUCAG-CCGUGaa------CUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 23983 0.67 0.364694
Target:  5'- uGCGCGUAuUCGGCGCacagacUGgcgaAGGUgGGCg -3'
miRNA:   3'- -CGCGCGUcAGCCGUGa-----AC----UCCGgCCG- -5'
26672 5' -59.5 NC_005808.1 + 24444 0.7 0.221983
Target:  5'- cGCGCGCGGccUCGGCGacaUUGAcGCCGa- -3'
miRNA:   3'- -CGCGCGUC--AGCCGUg--AACUcCGGCcg -5'
26672 5' -59.5 NC_005808.1 + 24554 0.8 0.042851
Target:  5'- uCGCGCAGcgCGGCGauggcGAGGCCGGCc -3'
miRNA:   3'- cGCGCGUCa-GCCGUgaa--CUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 24971 0.66 0.399896
Target:  5'- uGC-CGCAcgaugCGGCAaacaucGAGGCCGGUa -3'
miRNA:   3'- -CGcGCGUca---GCCGUgaa---CUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 25267 0.68 0.330896
Target:  5'- uCGCGCuGcUCGGuCACUucgucgaaugccuUGAGGUCGuGCg -3'
miRNA:   3'- cGCGCGuC-AGCC-GUGA-------------ACUCCGGC-CG- -5'
26672 5' -59.5 NC_005808.1 + 25488 0.69 0.284277
Target:  5'- gGCGCGCucgugcuuggucagGGUCaGGCcCgcgaUGAGGUCGGUu -3'
miRNA:   3'- -CGCGCG--------------UCAG-CCGuGa---ACUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 25795 0.66 0.446827
Target:  5'- uGCGCGCGGcgcgcUCGGUAUcgUUGAucugcaccgGGCCgccguuGGCg -3'
miRNA:   3'- -CGCGCGUC-----AGCCGUG--AACU---------CCGG------CCG- -5'
26672 5' -59.5 NC_005808.1 + 26013 0.66 0.40903
Target:  5'- uCGCGUGGUCGGC-CUcGu--CCGGCg -3'
miRNA:   3'- cGCGCGUCAGCCGuGAaCuccGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 26059 0.7 0.25251
Target:  5'- gGCGCGCuccaugcgcUCGGCgaACUcGGGGCgGGCc -3'
miRNA:   3'- -CGCGCGuc-------AGCCG--UGAaCUCCGgCCG- -5'
26672 5' -59.5 NC_005808.1 + 26789 0.66 0.418293
Target:  5'- uGCGCGguGgUGGC-CgaggguaacGAGGaCCGGCu -3'
miRNA:   3'- -CGCGCguCaGCCGuGaa-------CUCC-GGCCG- -5'
26672 5' -59.5 NC_005808.1 + 27029 0.72 0.183101
Target:  5'- aGCGCGUcGUcacugaCGGCGCcauugaccuggacgUgGAGGCCGGCa -3'
miRNA:   3'- -CGCGCGuCA------GCCGUG--------------AaCUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 27609 0.69 0.272435
Target:  5'- -gGCGUGGUCGucGCcCUUGAcgaugGGCCGGUg -3'
miRNA:   3'- cgCGCGUCAGC--CGuGAACU-----CCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 27672 1.12 0.000178
Target:  5'- gGCGCGCAGUCGGCACUUGAGGCCGGCc -3'
miRNA:   3'- -CGCGCGUCAGCCGUGAACUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 27888 0.69 0.279352
Target:  5'- cGgGCGCAGggcauggaGGCGCaacUGcAGGCCGGg -3'
miRNA:   3'- -CgCGCGUCag------CCGUGa--AC-UCCGGCCg -5'
26672 5' -59.5 NC_005808.1 + 28188 0.69 0.272435
Target:  5'- aCGCccaGCAGgugCGGCGcCUUGuccAGGUCGGCc -3'
miRNA:   3'- cGCG---CGUCa--GCCGU-GAAC---UCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 28319 0.67 0.382025
Target:  5'- gGCGCGCucggcGUCGG-ACUcGAuGGCCuuGGCc -3'
miRNA:   3'- -CGCGCGu----CAGCCgUGAaCU-CCGG--CCG- -5'
26672 5' -59.5 NC_005808.1 + 28596 0.76 0.086215
Target:  5'- aGCGUGguGUCGGUcaguucCUugaaccgggcgcggaUGAGGCCGGCc -3'
miRNA:   3'- -CGCGCguCAGCCGu-----GA---------------ACUCCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.