miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26672 5' -59.5 NC_005808.1 + 23935 0.71 0.216268
Target:  5'- gGCGUGaUGGUCaGGCGCcgcccggcGAGGUCGGCa -3'
miRNA:   3'- -CGCGC-GUCAG-CCGUGaa------CUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 23924 0.68 0.323793
Target:  5'- cGCGUGguGUaacaGGCcg--GGGGCgGGCg -3'
miRNA:   3'- -CGCGCguCAg---CCGugaaCUCCGgCCG- -5'
26672 5' -59.5 NC_005808.1 + 23743 0.69 0.293604
Target:  5'- gGCGCGCAG-CaGCGCcau--GCCGGCg -3'
miRNA:   3'- -CGCGCGUCaGcCGUGaacucCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 23628 0.67 0.382025
Target:  5'- aCGUGCGGUUGGUuucGCggua-GCCGGCg -3'
miRNA:   3'- cGCGCGUCAGCCG---UGaacucCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 23418 0.66 0.399896
Target:  5'- aGCGCGcCGGUCaGUGCgacgccGGCCGGg -3'
miRNA:   3'- -CGCGC-GUCAGcCGUGaacu--CCGGCCg -5'
26672 5' -59.5 NC_005808.1 + 23289 0.68 0.326936
Target:  5'- uGCGCcacgaaugccuguuuGCGGcCGGCACU---GGCCGGg -3'
miRNA:   3'- -CGCG---------------CGUCaGCCGUGAacuCCGGCCg -5'
26672 5' -59.5 NC_005808.1 + 22060 0.69 0.293604
Target:  5'- cGCGCuugcucgggucGCGGUCGGCGCgc--GGCUcgauGGCg -3'
miRNA:   3'- -CGCG-----------CGUCAGCCGUGaacuCCGG----CCG- -5'
26672 5' -59.5 NC_005808.1 + 19761 0.73 0.14082
Target:  5'- cGCGCGCuGUCGGCugUcGGcaGCgCGGCg -3'
miRNA:   3'- -CGCGCGuCAGCCGugAaCUc-CG-GCCG- -5'
26672 5' -59.5 NC_005808.1 + 19370 0.72 0.161366
Target:  5'- -gGCGCGGUCGGUggccGAGGCCgaGGCc -3'
miRNA:   3'- cgCGCGUCAGCCGugaaCUCCGG--CCG- -5'
26672 5' -59.5 NC_005808.1 + 19349 0.69 0.259015
Target:  5'- gGCGC-CAGgCGGCggaauuGCcgUUGAGGUCGGCc -3'
miRNA:   3'- -CGCGcGUCaGCCG------UG--AACUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 18835 0.68 0.316034
Target:  5'- cGCgGCGCA-UCGGCcCggUGGcGCCGGCa -3'
miRNA:   3'- -CG-CGCGUcAGCCGuGa-ACUcCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 18526 0.66 0.418293
Target:  5'- cCGCGCGGUCGcCGCUacUGu-GCgCGGCa -3'
miRNA:   3'- cGCGCGUCAGCcGUGA--ACucCG-GCCG- -5'
26672 5' -59.5 NC_005808.1 + 18440 0.76 0.08769
Target:  5'- aGCGCGCAGccgucgaGGCGCU--GGGCCaGGCg -3'
miRNA:   3'- -CGCGCGUCag-----CCGUGAacUCCGG-CCG- -5'
26672 5' -59.5 NC_005808.1 + 18170 0.7 0.25251
Target:  5'- cCGCGCg--CGGCACcgacaaaucGGGCCGGCu -3'
miRNA:   3'- cGCGCGucaGCCGUGaac------UCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 18028 0.71 0.216268
Target:  5'- uGCGgGUucuuGUCGGCgggcuGCUUGGGGgccuuaCCGGCg -3'
miRNA:   3'- -CGCgCGu---CAGCCG-----UGAACUCC------GGCCG- -5'
26672 5' -59.5 NC_005808.1 + 17643 0.69 0.286408
Target:  5'- cGUGCgGCAGUaCGGCcacgauCUUGAuGGCguCGGCg -3'
miRNA:   3'- -CGCG-CGUCA-GCCGu-----GAACU-CCG--GCCG- -5'
26672 5' -59.5 NC_005808.1 + 17305 0.76 0.09543
Target:  5'- gGCGCGCAuccauucCGGCAUaUG-GGCCGGCu -3'
miRNA:   3'- -CGCGCGUca-----GCCGUGaACuCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 17292 0.67 0.373291
Target:  5'- aGCGC-CGGU-GGCA----GGGCCGGCc -3'
miRNA:   3'- -CGCGcGUCAgCCGUgaacUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 17093 0.67 0.351225
Target:  5'- -gGCGCGGuucUCGGCcgggcCUUGGGGCuugaccacgaaguugCGGCa -3'
miRNA:   3'- cgCGCGUC---AGCCGu----GAACUCCG---------------GCCG- -5'
26672 5' -59.5 NC_005808.1 + 16322 0.66 0.418293
Target:  5'- cGCGCGCGaugcgCGaGC-CgaccAGGCCGGCg -3'
miRNA:   3'- -CGCGCGUca---GC-CGuGaac-UCCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.