miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26672 5' -59.5 NC_005808.1 + 28596 0.76 0.086215
Target:  5'- aGCGUGguGUCGGUcaguucCUugaaccgggcgcggaUGAGGCCGGCc -3'
miRNA:   3'- -CGCGCguCAGCCGu-----GA---------------ACUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 24554 0.8 0.042851
Target:  5'- uCGCGCAGcgCGGCGauggcGAGGCCGGCc -3'
miRNA:   3'- cGCGCGUCa-GCCGUgaa--CUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 4250 0.71 0.205215
Target:  5'- -gGCGUAGUCGGUGCcgGccgucAGcGCCGGCa -3'
miRNA:   3'- cgCGCGUCAGCCGUGaaC-----UC-CGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 23935 0.71 0.216268
Target:  5'- gGCGUGaUGGUCaGGCGCcgcccggcGAGGUCGGCa -3'
miRNA:   3'- -CGCGC-GUCAG-CCGUGaa------CUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 18028 0.71 0.216268
Target:  5'- uGCGgGUucuuGUCGGCgggcuGCUUGGGGgccuuaCCGGCg -3'
miRNA:   3'- -CGCgCGu---CAGCCG-----UGAACUCC------GGCCG- -5'
26672 5' -59.5 NC_005808.1 + 12373 0.68 0.316034
Target:  5'- uGCGCGuCGGUCGGCGagucGAuGCCuGCg -3'
miRNA:   3'- -CGCGC-GUCAGCCGUgaa-CUcCGGcCG- -5'
26672 5' -59.5 NC_005808.1 + 14676 0.68 0.308416
Target:  5'- gGUGCgGguGUUGaGCGCUUGAaGCCcGGCc -3'
miRNA:   3'- -CGCG-CguCAGC-CGUGAACUcCGG-CCG- -5'
26672 5' -59.5 NC_005808.1 + 23743 0.69 0.293604
Target:  5'- gGCGCGCAG-CaGCGCcau--GCCGGCg -3'
miRNA:   3'- -CGCGCGUCaGcCGUGaacucCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 22060 0.69 0.293604
Target:  5'- cGCGCuugcucgggucGCGGUCGGCGCgc--GGCUcgauGGCg -3'
miRNA:   3'- -CGCG-----------CGUCAGCCGUGaacuCCGG----CCG- -5'
26672 5' -59.5 NC_005808.1 + 17643 0.69 0.286408
Target:  5'- cGUGCgGCAGUaCGGCcacgauCUUGAuGGCguCGGCg -3'
miRNA:   3'- -CGCG-CGUCA-GCCGu-----GAACU-CCG--GCCG- -5'
26672 5' -59.5 NC_005808.1 + 25488 0.69 0.284277
Target:  5'- gGCGCGCucgugcuuggucagGGUCaGGCcCgcgaUGAGGUCGGUu -3'
miRNA:   3'- -CGCGCG--------------UCAG-CCGuGa---ACUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 7749 0.69 0.275185
Target:  5'- cUGCGCAGUcagcgauugcagcacCGGCGCgaucuGcGCCGGCg -3'
miRNA:   3'- cGCGCGUCA---------------GCCGUGaacu-C-CGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 24444 0.7 0.221983
Target:  5'- cGCGCGCGGccUCGGCGacaUUGAcGCCGa- -3'
miRNA:   3'- -CGCGCGUC--AGCCGUg--AACUcCGGCcg -5'
26672 5' -59.5 NC_005808.1 + 26059 0.7 0.25251
Target:  5'- gGCGCGCuccaugcgcUCGGCgaACUcGGGGCgGGCc -3'
miRNA:   3'- -CGCGCGuc-------AGCCG--UGAaCUCCGgCCG- -5'
26672 5' -59.5 NC_005808.1 + 19349 0.69 0.259015
Target:  5'- gGCGC-CAGgCGGCggaauuGCcgUUGAGGUCGGCc -3'
miRNA:   3'- -CGCGcGUCaGCCG------UG--AACUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 27609 0.69 0.272435
Target:  5'- -gGCGUGGUCGucGCcCUUGAcgaugGGCCGGUg -3'
miRNA:   3'- cgCGCGUCAGC--CGuGAACU-----CCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 28188 0.69 0.272435
Target:  5'- aCGCccaGCAGgugCGGCGcCUUGuccAGGUCGGCc -3'
miRNA:   3'- cGCG---CGUCa--GCCGU-GAAC---UCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 33932 0.66 0.446827
Target:  5'- uCGCGCGGcaCGcaaugccgaccGCGCgaUGaAGGCCGGCg -3'
miRNA:   3'- cGCGCGUCa-GC-----------CGUGa-AC-UCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 18440 0.76 0.08769
Target:  5'- aGCGCGCAGccgucgaGGCGCU--GGGCCaGGCg -3'
miRNA:   3'- -CGCGCGUCag-----CCGUGAacUCCGG-CCG- -5'
26672 5' -59.5 NC_005808.1 + 244 0.75 0.106164
Target:  5'- aGgGCcgGCGGUagcgaauccccaGGCGCUUGAGGCaCGGCg -3'
miRNA:   3'- -CgCG--CGUCAg-----------CCGUGAACUCCG-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.