Results 81 - 100 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 39664 | 0.67 | 0.382025 |
Target: 5'- cCGCGCGacgCGGUg--UG-GGCCGGCa -3' miRNA: 3'- cGCGCGUca-GCCGugaACuCCGGCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 39827 | 0.67 | 0.382025 |
Target: 5'- uGCGCaacgucgaGguGUCGGCA---GuGGUCGGCa -3' miRNA: 3'- -CGCG--------CguCAGCCGUgaaCuCCGGCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 28822 | 0.66 | 0.399896 |
Target: 5'- aGCGCGCcgucGUCGGguUgc--GGCCGGa -3' miRNA: 3'- -CGCGCGu---CAGCCguGaacuCCGGCCg -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 8999 | 0.66 | 0.399896 |
Target: 5'- cCGCGCGGg-GGCGCUUccagcAGG-CGGCg -3' miRNA: 3'- cGCGCGUCagCCGUGAAc----UCCgGCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 23418 | 0.66 | 0.399896 |
Target: 5'- aGCGCGcCGGUCaGUGCgacgccGGCCGGg -3' miRNA: 3'- -CGCGC-GUCAGcCGUGaacu--CCGGCCg -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 8775 | 0.66 | 0.40903 |
Target: 5'- uCGgGCAGcacgCGGCGCacgauGGGUCGGCc -3' miRNA: 3'- cGCgCGUCa---GCCGUGaac--UCCGGCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 37491 | 0.66 | 0.40903 |
Target: 5'- gGCGC-CAGccgcacCGGaCGCU--GGGCCGGCc -3' miRNA: 3'- -CGCGcGUCa-----GCC-GUGAacUCCGGCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 11177 | 0.66 | 0.40903 |
Target: 5'- cGUGCGCuGGUCGGC-CguggUGAuGGUgCGGUc -3' miRNA: 3'- -CGCGCG-UCAGCCGuGa---ACU-CCG-GCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 1687 | 0.67 | 0.373291 |
Target: 5'- cGCGCagGUAGUCGagaaauuCGCcgUG-GGCCGGCg -3' miRNA: 3'- -CGCG--CGUCAGCc------GUGa-ACuCCGGCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 28649 | 0.67 | 0.372425 |
Target: 5'- cGCGCGCAGugccagaUCGGUGCcgGcGGCCucgccagcgcGGCg -3' miRNA: 3'- -CGCGCGUC-------AGCCGUGaaCuCCGG----------CCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 23289 | 0.68 | 0.326936 |
Target: 5'- uGCGCcacgaaugccuguuuGCGGcCGGCACU---GGCCGGg -3' miRNA: 3'- -CGCG---------------CGUCaGCCGUGAacuCCGGCCg -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 25267 | 0.68 | 0.330896 |
Target: 5'- uCGCGCuGcUCGGuCACUucgucgaaugccuUGAGGUCGuGCg -3' miRNA: 3'- cGCGCGuC-AGCC-GUGA-------------ACUCCGGC-CG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 13290 | 0.68 | 0.331692 |
Target: 5'- aGCGCcgauuGCAG-C-GCGCc-GGGGCCGGCg -3' miRNA: 3'- -CGCG-----CGUCaGcCGUGaaCUCCGGCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 2417 | 0.67 | 0.347914 |
Target: 5'- -aGCGUAGguguaCGGCAgc--AGGCCGGCc -3' miRNA: 3'- cgCGCGUCa----GCCGUgaacUCCGGCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 40839 | 0.67 | 0.347914 |
Target: 5'- aCGCGCca--GGCGC---AGGCCGGCc -3' miRNA: 3'- cGCGCGucagCCGUGaacUCCGGCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 17093 | 0.67 | 0.351225 |
Target: 5'- -gGCGCGGuucUCGGCcgggcCUUGGGGCuugaccacgaaguugCGGCa -3' miRNA: 3'- cgCGCGUC---AGCCGu----GAACUCCG---------------GCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 13181 | 0.67 | 0.356234 |
Target: 5'- cCGCGC--UgGGCGCccuuGGCCGGCg -3' miRNA: 3'- cGCGCGucAgCCGUGaacuCCGGCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 30169 | 0.67 | 0.359602 |
Target: 5'- aGCG-GCAGUUGGCGCcagucggUGAaGGCCaugaaguagccgccgGGCu -3' miRNA: 3'- -CGCgCGUCAGCCGUGa------ACU-CCGG---------------CCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 13392 | 0.67 | 0.364694 |
Target: 5'- aGCGCGCGGUuguaggCGGCAUcgUUGcGGUaaCGGUu -3' miRNA: 3'- -CGCGCGUCA------GCCGUG--AACuCCG--GCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 23983 | 0.67 | 0.364694 |
Target: 5'- uGCGCGUAuUCGGCGCacagacUGgcgaAGGUgGGCg -3' miRNA: 3'- -CGCGCGUcAGCCGUGa-----AC----UCCGgCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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