miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26673 3' -50.3 NC_005808.1 + 27542 1.13 0.001274
Target:  5'- uCAGUCGAACAUUGCCCGCAUCAACGCg -3'
miRNA:   3'- -GUCAGCUUGUAACGGGCGUAGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 10852 0.75 0.410546
Target:  5'- uGGUCGAGCAg-GCCCuGCguggcuucgGUCGGCGCg -3'
miRNA:   3'- gUCAGCUUGUaaCGGG-CG---------UAGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 39126 0.73 0.493556
Target:  5'- -cGUCGAACuc-GCCCGCGaacaUCGggGCGCg -3'
miRNA:   3'- guCAGCUUGuaaCGGGCGU----AGU--UGCG- -5'
26673 3' -50.3 NC_005808.1 + 6539 0.73 0.504482
Target:  5'- gGGUCGu-CGUcGCCCgaaucgccagGCGUCAGCGCa -3'
miRNA:   3'- gUCAGCuuGUAaCGGG----------CGUAGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 15034 0.73 0.515511
Target:  5'- -cGUUGGuguugGCGaUGCCCGCGUUGAUGCg -3'
miRNA:   3'- guCAGCU-----UGUaACGGGCGUAGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 34034 0.72 0.560515
Target:  5'- -uGUCGcGCcugucgcUGCCCGcCAUCGGCGCg -3'
miRNA:   3'- guCAGCuUGua-----ACGGGC-GUAGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 9192 0.71 0.629728
Target:  5'- -cGUCG-ACGUUgGCCUGCucggCGGCGCg -3'
miRNA:   3'- guCAGCuUGUAA-CGGGCGua--GUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 17922 0.7 0.676054
Target:  5'- uGGgcgUGGACGUgGCCCGCGgcgGGCGCg -3'
miRNA:   3'- gUCa--GCUUGUAaCGGGCGUag-UUGCG- -5'
26673 3' -50.3 NC_005808.1 + 21101 0.7 0.687551
Target:  5'- -cGUCGGugAgcgcguuuugcUUGCUgGUAUCGACGCu -3'
miRNA:   3'- guCAGCUugU-----------AACGGgCGUAGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 5007 0.7 0.698989
Target:  5'- aGGUCGGcGCA--GUCCGCuuUCAGCGCc -3'
miRNA:   3'- gUCAGCU-UGUaaCGGGCGu-AGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 8666 0.7 0.698989
Target:  5'- gCGGUCG-GCAUUGCgUGCcgC-GCGCa -3'
miRNA:   3'- -GUCAGCuUGUAACGgGCGuaGuUGCG- -5'
26673 3' -50.3 NC_005808.1 + 4253 0.7 0.710354
Target:  5'- gUAGUCGG----UGCCgGcCGUCAGCGCc -3'
miRNA:   3'- -GUCAGCUuguaACGGgC-GUAGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 34552 0.7 0.710354
Target:  5'- uGGUCGAGCAgcgGUUgaGCGUCGAgGCu -3'
miRNA:   3'- gUCAGCUUGUaa-CGGg-CGUAGUUgCG- -5'
26673 3' -50.3 NC_005808.1 + 42078 0.69 0.721634
Target:  5'- aCGGcCGAACAgaaccGCCUGCAagccgccgCGGCGCa -3'
miRNA:   3'- -GUCaGCUUGUaa---CGGGCGUa-------GUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 24785 0.69 0.732815
Target:  5'- gGGUCGuccuCGaUGCCCGCGUUGAaguCGCc -3'
miRNA:   3'- gUCAGCuu--GUaACGGGCGUAGUU---GCG- -5'
26673 3' -50.3 NC_005808.1 + 5819 0.69 0.754828
Target:  5'- aUAGUCGGGCAUgGCgUGCcgCAGCa- -3'
miRNA:   3'- -GUCAGCUUGUAaCGgGCGuaGUUGcg -5'
26673 3' -50.3 NC_005808.1 + 2818 0.69 0.754828
Target:  5'- -cGUCGGGCcaggUGCUCGCggCcACGCg -3'
miRNA:   3'- guCAGCUUGua--ACGGGCGuaGuUGCG- -5'
26673 3' -50.3 NC_005808.1 + 21259 0.69 0.765631
Target:  5'- gGGUCGA----UGCCCaGCAugUCGGCGUa -3'
miRNA:   3'- gUCAGCUuguaACGGG-CGU--AGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 31852 0.68 0.780497
Target:  5'- aAGUCGAGCGc-GCCCuuggcgagcagcaagGCGaCGACGCa -3'
miRNA:   3'- gUCAGCUUGUaaCGGG---------------CGUaGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 30709 0.68 0.785727
Target:  5'- uGG-CGGGCAUgGCUuucuccaucggaaUGCGUCAACGCa -3'
miRNA:   3'- gUCaGCUUGUAaCGG-------------GCGUAGUUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.