miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26673 3' -50.3 NC_005808.1 + 1506 0.66 0.909622
Target:  5'- uGGUCGGACAUggcGCCCcCuuauUCGcCGCc -3'
miRNA:   3'- gUCAGCUUGUAa--CGGGcGu---AGUuGCG- -5'
26673 3' -50.3 NC_005808.1 + 2244 0.66 0.902616
Target:  5'- -cGcCGGGCcuugGCCgGCAguUCGACGCg -3'
miRNA:   3'- guCaGCUUGuaa-CGGgCGU--AGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 2272 0.67 0.845489
Target:  5'- -uGUCGAucaucgcguACAgUGCCgCGCgGUCGAUGCu -3'
miRNA:   3'- guCAGCU---------UGUaACGG-GCG-UAGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 2818 0.69 0.754828
Target:  5'- -cGUCGGGCcaggUGCUCGCggCcACGCg -3'
miRNA:   3'- guCAGCUUGua--ACGGGCGuaGuUGCG- -5'
26673 3' -50.3 NC_005808.1 + 3269 0.68 0.797074
Target:  5'- ----gGAACAUUuCCCGCG-CAACGCc -3'
miRNA:   3'- gucagCUUGUAAcGGGCGUaGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 4253 0.7 0.710354
Target:  5'- gUAGUCGG----UGCCgGcCGUCAGCGCc -3'
miRNA:   3'- -GUCAGCUuguaACGGgC-GUAGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 4844 0.67 0.835325
Target:  5'- gUAGUCGAugAccauaggUUGCCCG-GUCAggucguugcccaGCGCg -3'
miRNA:   3'- -GUCAGCUugU-------AACGGGCgUAGU------------UGCG- -5'
26673 3' -50.3 NC_005808.1 + 4924 0.66 0.909622
Target:  5'- -cGUCGGcaGCGaUGCCCGCGaCGGucUGCa -3'
miRNA:   3'- guCAGCU--UGUaACGGGCGUaGUU--GCG- -5'
26673 3' -50.3 NC_005808.1 + 5007 0.7 0.698989
Target:  5'- aGGUCGGcGCA--GUCCGCuuUCAGCGCc -3'
miRNA:   3'- gUCAGCU-UGUaaCGGGCGu-AGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 5819 0.69 0.754828
Target:  5'- aUAGUCGGGCAUgGCgUGCcgCAGCa- -3'
miRNA:   3'- -GUCAGCUUGUAaCGgGCGuaGUUGcg -5'
26673 3' -50.3 NC_005808.1 + 6485 0.66 0.879815
Target:  5'- -cGcCGcGCAg-GCCCGCAUUcACGCg -3'
miRNA:   3'- guCaGCuUGUaaCGGGCGUAGuUGCG- -5'
26673 3' -50.3 NC_005808.1 + 6539 0.73 0.504482
Target:  5'- gGGUCGu-CGUcGCCCgaaucgccagGCGUCAGCGCa -3'
miRNA:   3'- gUCAGCuuGUAaCGGG----------CGUAGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 7950 0.66 0.887707
Target:  5'- --uUCcGACAgcUUGCCCGUGgccUCGGCGCg -3'
miRNA:   3'- gucAGcUUGU--AACGGGCGU---AGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 8493 0.67 0.836261
Target:  5'- uGGUCG-GCAUaGUCCaCGUCGAUGCc -3'
miRNA:   3'- gUCAGCuUGUAaCGGGcGUAGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 8529 0.66 0.902616
Target:  5'- cCGG-CGAAC-UUGCCCagGUAUCGcaggccGCGCu -3'
miRNA:   3'- -GUCaGCUUGuAACGGG--CGUAGU------UGCG- -5'
26673 3' -50.3 NC_005808.1 + 8666 0.7 0.698989
Target:  5'- gCGGUCG-GCAUUGCgUGCcgC-GCGCa -3'
miRNA:   3'- -GUCAGCuUGUAACGgGCGuaGuUGCG- -5'
26673 3' -50.3 NC_005808.1 + 8830 0.66 0.87164
Target:  5'- gGGUCGGGCca-GCCgcaaCGCGggcCAGCGCg -3'
miRNA:   3'- gUCAGCUUGuaaCGG----GCGUa--GUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 9192 0.71 0.629728
Target:  5'- -cGUCG-ACGUUgGCCUGCucggCGGCGCg -3'
miRNA:   3'- guCAGCuUGUAA-CGGGCGua--GUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 10852 0.75 0.410546
Target:  5'- uGGUCGAGCAg-GCCCuGCguggcuucgGUCGGCGCg -3'
miRNA:   3'- gUCAGCUUGUaaCGGG-CG---------UAGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 11075 0.68 0.786768
Target:  5'- --cUCGAACG-UGUCCGgGUCGcGCGCg -3'
miRNA:   3'- gucAGCUUGUaACGGGCgUAGU-UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.