miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26673 3' -50.3 NC_005808.1 + 8493 0.67 0.836261
Target:  5'- uGGUCG-GCAUaGUCCaCGUCGAUGCc -3'
miRNA:   3'- gUCAGCuUGUAaCGGGcGUAGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 11075 0.68 0.786768
Target:  5'- --cUCGAACG-UGUCCGgGUCGcGCGCg -3'
miRNA:   3'- gucAGCUUGUaACGGGCgUAGU-UGCG- -5'
26673 3' -50.3 NC_005808.1 + 3269 0.68 0.797074
Target:  5'- ----gGAACAUUuCCCGCG-CAACGCc -3'
miRNA:   3'- gucagCUUGUAAcGGGCGUaGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 15986 0.68 0.807189
Target:  5'- -uGUCGAACAggUGCgCCGC----GCGCa -3'
miRNA:   3'- guCAGCUUGUa-ACG-GGCGuaguUGCG- -5'
26673 3' -50.3 NC_005808.1 + 18911 0.68 0.8171
Target:  5'- aGGUCGAugAggucggcGCCCGCGcUGGCGUu -3'
miRNA:   3'- gUCAGCUugUaa-----CGGGCGUaGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 35218 0.68 0.8171
Target:  5'- aGGUCGccGCggUGCCCGCcgCuggacgaacGACGCc -3'
miRNA:   3'- gUCAGCu-UGuaACGGGCGuaG---------UUGCG- -5'
26673 3' -50.3 NC_005808.1 + 22052 0.68 0.8171
Target:  5'- gCGGUCGucGCGcUUGCUCGgGUCGcggucgGCGCg -3'
miRNA:   3'- -GUCAGCu-UGU-AACGGGCgUAGU------UGCG- -5'
26673 3' -50.3 NC_005808.1 + 38881 0.67 0.825835
Target:  5'- ---gCGAGCAUgagcggaUGCgCCGCAUggggCAGCGCg -3'
miRNA:   3'- gucaGCUUGUA-------ACG-GGCGUA----GUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 4844 0.67 0.835325
Target:  5'- gUAGUCGAugAccauaggUUGCCCG-GUCAggucguugcccaGCGCg -3'
miRNA:   3'- -GUCAGCUugU-------AACGGGCgUAGU------------UGCG- -5'
26673 3' -50.3 NC_005808.1 + 30709 0.68 0.785727
Target:  5'- uGG-CGGGCAUgGCUuucuccaucggaaUGCGUCAACGCa -3'
miRNA:   3'- gUCaGCUUGUAaCGG-------------GCGUAGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 21259 0.69 0.765631
Target:  5'- gGGUCGA----UGCCCaGCAugUCGGCGUa -3'
miRNA:   3'- gUCAGCUuguaACGGG-CGU--AGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 24785 0.69 0.732815
Target:  5'- gGGUCGuccuCGaUGCCCGCGUUGAaguCGCc -3'
miRNA:   3'- gUCAGCuu--GUaACGGGCGUAGUU---GCG- -5'
26673 3' -50.3 NC_005808.1 + 6539 0.73 0.504482
Target:  5'- gGGUCGu-CGUcGCCCgaaucgccagGCGUCAGCGCa -3'
miRNA:   3'- gUCAGCuuGUAaCGGG----------CGUAGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 15034 0.73 0.515511
Target:  5'- -cGUUGGuguugGCGaUGCCCGCGUUGAUGCg -3'
miRNA:   3'- guCAGCU-----UGUaACGGGCGUAGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 34034 0.72 0.560515
Target:  5'- -uGUCGcGCcugucgcUGCCCGcCAUCGGCGCg -3'
miRNA:   3'- guCAGCuUGua-----ACGGGC-GUAGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 9192 0.71 0.629728
Target:  5'- -cGUCG-ACGUUgGCCUGCucggCGGCGCg -3'
miRNA:   3'- guCAGCuUGUAA-CGGGCGua--GUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 21101 0.7 0.687551
Target:  5'- -cGUCGGugAgcgcguuuugcUUGCUgGUAUCGACGCu -3'
miRNA:   3'- guCAGCUugU-----------AACGGgCGUAGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 8666 0.7 0.698989
Target:  5'- gCGGUCG-GCAUUGCgUGCcgC-GCGCa -3'
miRNA:   3'- -GUCAGCuUGUAACGgGCGuaGuUGCG- -5'
26673 3' -50.3 NC_005808.1 + 34552 0.7 0.710354
Target:  5'- uGGUCGAGCAgcgGUUgaGCGUCGAgGCu -3'
miRNA:   3'- gUCAGCUUGUaa-CGGg-CGUAGUUgCG- -5'
26673 3' -50.3 NC_005808.1 + 4253 0.7 0.710354
Target:  5'- gUAGUCGG----UGCCgGcCGUCAGCGCc -3'
miRNA:   3'- -GUCAGCUuguaACGGgC-GUAGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.