Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26674 | 3' | -59.9 | NC_005808.1 | + | 19478 | 0.69 | 0.289036 |
Target: 5'- gCUUGcGCCaGGUGcCGGUGG-GCAggCCGCu -3' miRNA: 3'- -GGAC-CGG-CUAC-GCCGCCaCGUa-GGCG- -5' |
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26674 | 3' | -59.9 | NC_005808.1 | + | 36024 | 0.68 | 0.303548 |
Target: 5'- cCCUGGCCGAgGCGGaUGGcaaGCccuaCGCg -3' miRNA: 3'- -GGACCGGCUaCGCC-GCCa--CGuag-GCG- -5' |
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26674 | 3' | -59.9 | NC_005808.1 | + | 21584 | 0.68 | 0.311011 |
Target: 5'- --cGGCCacuucgGUGGCGGU-CAUCUGCg -3' miRNA: 3'- ggaCCGGcua---CGCCGCCAcGUAGGCG- -5' |
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26674 | 3' | -59.9 | NC_005808.1 | + | 12709 | 0.68 | 0.325575 |
Target: 5'- gCCUGucauGCCGGggggGgGGUGGUGCuagacccGUUCGCa -3' miRNA: 3'- -GGAC----CGGCUa---CgCCGCCACG-------UAGGCG- -5' |
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26674 | 3' | -59.9 | NC_005808.1 | + | 15105 | 0.67 | 0.350409 |
Target: 5'- --cGGCCGAggccGcCGGCauccucgcguGGUGCGUgCGCg -3' miRNA: 3'- ggaCCGGCUa---C-GCCG----------CCACGUAgGCG- -5' |
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26674 | 3' | -59.9 | NC_005808.1 | + | 41417 | 0.67 | 0.364588 |
Target: 5'- aCCcGGCCGAccccgGCGGCGagacuauguggggcGUGaCcgCCGCc -3' miRNA: 3'- -GGaCCGGCUa----CGCCGC--------------CAC-GuaGGCG- -5' |
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26674 | 3' | -59.9 | NC_005808.1 | + | 5600 | 0.67 | 0.367131 |
Target: 5'- uUUGGCCcacucgGCGG-GGUGCGuUUCGCg -3' miRNA: 3'- gGACCGGcua---CGCCgCCACGU-AGGCG- -5' |
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26674 | 3' | -59.9 | NC_005808.1 | + | 41485 | 0.66 | 0.402188 |
Target: 5'- aCCgGGCCGAUGCG-CGa--CAUgCCGCg -3' miRNA: 3'- -GGaCCGGCUACGCcGCcacGUA-GGCG- -5' |
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26674 | 3' | -59.9 | NC_005808.1 | + | 9772 | 0.66 | 0.402188 |
Target: 5'- ---aGCCGuUGCGGCuGGUGUAgUCCGa -3' miRNA: 3'- ggacCGGCuACGCCG-CCACGU-AGGCg -5' |
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26674 | 3' | -59.9 | NC_005808.1 | + | 8649 | 0.66 | 0.433606 |
Target: 5'- cCCaGGCCGcgccguacucgcuguGUGCaGCGGcUGCugcgCCGCc -3' miRNA: 3'- -GGaCCGGC---------------UACGcCGCC-ACGua--GGCG- -5' |
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26674 | 3' | -59.9 | NC_005808.1 | + | 41776 | 0.68 | 0.294052 |
Target: 5'- aCCUGGCCGAcguucggcaagggcUGgGcGCGGcGCGU-CGCc -3' miRNA: 3'- -GGACCGGCU--------------ACgC-CGCCaCGUAgGCG- -5' |
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26674 | 3' | -59.9 | NC_005808.1 | + | 24747 | 0.69 | 0.275074 |
Target: 5'- aCCUGGgCGAcgaggccacgGUGGCGG-GCAUcaacCCGCc -3' miRNA: 3'- -GGACCgGCUa---------CGCCGCCaCGUA----GGCG- -5' |
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26674 | 3' | -59.9 | NC_005808.1 | + | 13577 | 0.69 | 0.268298 |
Target: 5'- aCCUGGCCGAaGC-GCGGcGCcuggUCGCc -3' miRNA: 3'- -GGACCGGCUaCGcCGCCaCGua--GGCG- -5' |
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26674 | 3' | -59.9 | NC_005808.1 | + | 9672 | 0.69 | 0.261657 |
Target: 5'- cCCUGGCCGAacagccagccgUGCaGGCcGUGg--CCGCa -3' miRNA: 3'- -GGACCGGCU-----------ACG-CCGcCACguaGGCG- -5' |
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26674 | 3' | -59.9 | NC_005808.1 | + | 22969 | 0.7 | 0.242537 |
Target: 5'- gCUGGCCGAUGUcGCGGcccGCAUgaccCCGg -3' miRNA: 3'- gGACCGGCUACGcCGCCa--CGUA----GGCg -5' |
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26674 | 3' | -59.9 | NC_005808.1 | + | 32724 | 0.72 | 0.168219 |
Target: 5'- gCCUGGCCGAgaagcaGCGcGcCGGUGCca-CGCu -3' miRNA: 3'- -GGACCGGCUa-----CGC-C-GCCACGuagGCG- -5' |
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26674 | 3' | -59.9 | NC_005808.1 | + | 31624 | 0.73 | 0.151075 |
Target: 5'- gCCUGGCCGAacagGUGGCcgcaguguccccGGcUGUcgCCGCg -3' miRNA: 3'- -GGACCGGCUa---CGCCG------------CC-ACGuaGGCG- -5' |
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26674 | 3' | -59.9 | NC_005808.1 | + | 25154 | 0.73 | 0.135534 |
Target: 5'- aCCUGGCCucGAUGCuGGCGGgGCcaCUGCu -3' miRNA: 3'- -GGACCGG--CUACG-CCGCCaCGuaGGCG- -5' |
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26674 | 3' | -59.9 | NC_005808.1 | + | 27002 | 0.96 | 0.002767 |
Target: 5'- uCCUGGCCGAUG-GcGCGGUGCAUCCGCa -3' miRNA: 3'- -GGACCGGCUACgC-CGCCACGUAGGCG- -5' |
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26674 | 3' | -59.9 | NC_005808.1 | + | 5197 | 0.66 | 0.439297 |
Target: 5'- ---uGCUGGUGCuGGUGGUGCuggCCuGCa -3' miRNA: 3'- ggacCGGCUACG-CCGCCACGua-GG-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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