Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26674 | 5' | -55.6 | NC_005808.1 | + | 16769 | 0.66 | 0.611846 |
Target: 5'- -aACUGAcCGGCGCCAacggcGGCCcGGuGCa -3' miRNA: 3'- agUGACU-GCCGCGGUaa---CUGGaCC-UG- -5' |
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26674 | 5' | -55.6 | NC_005808.1 | + | 18887 | 0.66 | 0.578267 |
Target: 5'- gCACUGGCccgcgaccugGGCGCUAccGGCCUGuACg -3' miRNA: 3'- aGUGACUG----------CCGCGGUaaCUGGACcUG- -5' |
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26674 | 5' | -55.6 | NC_005808.1 | + | 8451 | 0.66 | 0.634339 |
Target: 5'- gCGCgaUGuCGGCGUCGaggUGGCCUGcGAUg -3' miRNA: 3'- aGUG--ACuGCCGCGGUa--ACUGGAC-CUG- -5' |
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26674 | 5' | -55.6 | NC_005808.1 | + | 9317 | 0.66 | 0.634339 |
Target: 5'- aC-CUGGCGGCGCaCGUcGGCgCggcGGGCg -3' miRNA: 3'- aGuGACUGCCGCG-GUAaCUG-Ga--CCUG- -5' |
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26674 | 5' | -55.6 | NC_005808.1 | + | 24267 | 0.66 | 0.623088 |
Target: 5'- cCACcuUGAgcgUGGCGCCGgacagUGACCacguggGGGCg -3' miRNA: 3'- aGUG--ACU---GCCGCGGUa----ACUGGa-----CCUG- -5' |
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26674 | 5' | -55.6 | NC_005808.1 | + | 34702 | 0.66 | 0.623088 |
Target: 5'- -aGCUGGCGaucuacgcacGCGCCGc---CCUGGACg -3' miRNA: 3'- agUGACUGC----------CGCGGUaacuGGACCUG- -5' |
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26674 | 5' | -55.6 | NC_005808.1 | + | 37485 | 0.66 | 0.578267 |
Target: 5'- uUCA---ACGGCGCCAgccgcaccgGACgCUGGGCc -3' miRNA: 3'- -AGUgacUGCCGCGGUaa-------CUG-GACCUG- -5' |
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26674 | 5' | -55.6 | NC_005808.1 | + | 25313 | 0.66 | 0.634339 |
Target: 5'- gCGCccGCGGCGCCGgcuuCgUGGACg -3' miRNA: 3'- aGUGacUGCCGCGGUaacuGgACCUG- -5' |
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26674 | 5' | -55.6 | NC_005808.1 | + | 17906 | 0.66 | 0.623088 |
Target: 5'- gCACcGAUGGacaGCCug-GGCgUGGACg -3' miRNA: 3'- aGUGaCUGCCg--CGGuaaCUGgACCUG- -5' |
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26674 | 5' | -55.6 | NC_005808.1 | + | 14318 | 0.66 | 0.578267 |
Target: 5'- -aACUGGCGcGCGCC-UUGGCUgaacugccGGGCc -3' miRNA: 3'- agUGACUGC-CGCGGuAACUGGa-------CCUG- -5' |
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26674 | 5' | -55.6 | NC_005808.1 | + | 34409 | 0.67 | 0.512579 |
Target: 5'- gUCGCUGACgaacgggcaGGaCGCCAgcgccuuCCUGGGCc -3' miRNA: 3'- -AGUGACUG---------CC-GCGGUaacu---GGACCUG- -5' |
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26674 | 5' | -55.6 | NC_005808.1 | + | 15146 | 0.67 | 0.534182 |
Target: 5'- gCGCUGGCauaccaGCGCCAg-GGCCUGcGGCc -3' miRNA: 3'- aGUGACUGc-----CGCGGUaaCUGGAC-CUG- -5' |
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26674 | 5' | -55.6 | NC_005808.1 | + | 42484 | 0.67 | 0.545104 |
Target: 5'- aCGCgaagugguugGACGGCGCgCAgaacGAUCUGGAa -3' miRNA: 3'- aGUGa---------CUGCCGCG-GUaa--CUGGACCUg -5' |
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26674 | 5' | -55.6 | NC_005808.1 | + | 35411 | 0.67 | 0.533094 |
Target: 5'- gCGCUGucccggcugcgucAgGGCGUCAgcgcgucgGGCCUGGGCu -3' miRNA: 3'- aGUGAC-------------UgCCGCGGUaa------CUGGACCUG- -5' |
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26674 | 5' | -55.6 | NC_005808.1 | + | 2841 | 0.67 | 0.519024 |
Target: 5'- aCGCgcaGCGGCGCCAgcaccagcgaggGGCCUGGu- -3' miRNA: 3'- aGUGac-UGCCGCGGUaa----------CUGGACCug -5' |
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26674 | 5' | -55.6 | NC_005808.1 | + | 18327 | 0.67 | 0.567155 |
Target: 5'- gUCACUGucCGGCGCCAcgcucaaggUGgcaaGCCgcgaGGACa -3' miRNA: 3'- -AGUGACu-GCCGCGGUa--------AC----UGGa---CCUG- -5' |
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26674 | 5' | -55.6 | NC_005808.1 | + | 13543 | 0.67 | 0.545104 |
Target: 5'- cCGCUGAUGGCcuacgagccGCCGguggguaucGACCUGGcCg -3' miRNA: 3'- aGUGACUGCCG---------CGGUaa-------CUGGACCuG- -5' |
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26674 | 5' | -55.6 | NC_005808.1 | + | 16983 | 0.67 | 0.545104 |
Target: 5'- -uGCUGGCGaccGCGCCGccgUGguugccacuGCCUGGGCc -3' miRNA: 3'- agUGACUGC---CGCGGUa--AC---------UGGACCUG- -5' |
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26674 | 5' | -55.6 | NC_005808.1 | + | 40457 | 0.67 | 0.512579 |
Target: 5'- gUAC-GGCGGCGCgGUUGACC-GGcuGCu -3' miRNA: 3'- aGUGaCUGCCGCGgUAACUGGaCC--UG- -5' |
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26674 | 5' | -55.6 | NC_005808.1 | + | 14381 | 0.68 | 0.460288 |
Target: 5'- gCGCgugGucguCGGCGUgGccGACCUGGACa -3' miRNA: 3'- aGUGa--Cu---GCCGCGgUaaCUGGACCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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