miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26675 3' -54.6 NC_005808.1 + 38721 0.66 0.686457
Target:  5'- gGCgACG-GCaGCGc---GGCCUACAGCg -3'
miRNA:   3'- -CGgUGCaCG-CGCuugaCCGGAUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 24140 0.66 0.686457
Target:  5'- aGCCGgcUGCGCGc-CUGGCC--CAGCg -3'
miRNA:   3'- -CGGUgcACGCGCuuGACCGGauGUUG- -5'
26675 3' -54.6 NC_005808.1 + 34978 0.66 0.686457
Target:  5'- gGCCACGUguccggcgcuGCGCGAccacguGCUGuccaccgucGCCgACGACu -3'
miRNA:   3'- -CGGUGCA----------CGCGCU------UGAC---------CGGaUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 4044 0.66 0.686457
Target:  5'- gGCCGCG---GCGAGCggcaGGCCaGCGGCc -3'
miRNA:   3'- -CGGUGCacgCGCUUGa---CCGGaUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 27857 0.66 0.675245
Target:  5'- cGCCaAUGcUGCGCGuACUG-CCUGgGGCu -3'
miRNA:   3'- -CGG-UGC-ACGCGCuUGACcGGAUgUUG- -5'
26675 3' -54.6 NC_005808.1 + 5105 0.66 0.66399
Target:  5'- gGCCcaGCGUccgGUGCG-GCUGGCgccguugaaCUGCAACg -3'
miRNA:   3'- -CGG--UGCA---CGCGCuUGACCG---------GAUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 28874 0.66 0.66399
Target:  5'- cGCCACGUccucgcugcugGCGUaguuGCUGGCCgucgcCGACc -3'
miRNA:   3'- -CGGUGCA-----------CGCGcu--UGACCGGau---GUUG- -5'
26675 3' -54.6 NC_005808.1 + 25616 0.66 0.66399
Target:  5'- aCCACGgcgGCGCGGuc--GCCaGCAGCg -3'
miRNA:   3'- cGGUGCa--CGCGCUugacCGGaUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 34022 0.66 0.66399
Target:  5'- gGCCGCacGCGC-----GGCCUACGACg -3'
miRNA:   3'- -CGGUGcaCGCGcuugaCCGGAUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 25194 0.66 0.652704
Target:  5'- uGUCAUGagcacGCGCGAccGCUGGCC--CGGCu -3'
miRNA:   3'- -CGGUGCa----CGCGCU--UGACCGGauGUUG- -5'
26675 3' -54.6 NC_005808.1 + 33102 0.66 0.652704
Target:  5'- cGCCACG-GCG-GAACaGGCUgGCAugACg -3'
miRNA:   3'- -CGGUGCaCGCgCUUGaCCGGaUGU--UG- -5'
26675 3' -54.6 NC_005808.1 + 26827 0.66 0.641397
Target:  5'- uGCCGuCGUGCGuCGcaccAUUGGCg-GCAACg -3'
miRNA:   3'- -CGGU-GCACGC-GCu---UGACCGgaUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 42192 0.66 0.641397
Target:  5'- cGCgACGUGCugcucaacagucGCGcGCUGGCCgcgcuCAAUc -3'
miRNA:   3'- -CGgUGCACG------------CGCuUGACCGGau---GUUG- -5'
26675 3' -54.6 NC_005808.1 + 39770 0.66 0.641397
Target:  5'- cGCCgcugcGCGUGgcCGCGAGCaccUGGCCcgACGAa -3'
miRNA:   3'- -CGG-----UGCAC--GCGCUUG---ACCGGa-UGUUg -5'
26675 3' -54.6 NC_005808.1 + 28392 0.67 0.630081
Target:  5'- aGCCGCGcUGCGC---CUGaCCUAUGACa -3'
miRNA:   3'- -CGGUGC-ACGCGcuuGACcGGAUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 26333 0.67 0.630081
Target:  5'- -aCGCGcacCGCGAACUGGCCgcGCcGCu -3'
miRNA:   3'- cgGUGCac-GCGCUUGACCGGa-UGuUG- -5'
26675 3' -54.6 NC_005808.1 + 33400 0.67 0.630081
Target:  5'- cGCCGCGccGC-CGAGCaGGCCaacgucgACGGCg -3'
miRNA:   3'- -CGGUGCa-CGcGCUUGaCCGGa------UGUUG- -5'
26675 3' -54.6 NC_005808.1 + 10088 0.67 0.596188
Target:  5'- aGCCugcACGgGCGCGGAguuCUcGGCCUugGAUu -3'
miRNA:   3'- -CGG---UGCaCGCGCUU---GA-CCGGAugUUG- -5'
26675 3' -54.6 NC_005808.1 + 22318 0.67 0.596188
Target:  5'- cGCUACugGUGCGgGcAACgacGGCCaACAGCa -3'
miRNA:   3'- -CGGUG--CACGCgC-UUGa--CCGGaUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 13248 0.67 0.596188
Target:  5'- gGCCAcCG-GCGCGugguucgagGACuUGGCCgGCGACc -3'
miRNA:   3'- -CGGU-GCaCGCGC---------UUG-ACCGGaUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.