miRNA display CGI


Results 41 - 60 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26675 3' -54.6 NC_005808.1 + 12382 0.69 0.465756
Target:  5'- cGCCgaguGCGUGCGCGuGCUcaaGCCcgGCGGCu -3'
miRNA:   3'- -CGG----UGCACGCGCuUGAc--CGGa-UGUUG- -5'
26675 3' -54.6 NC_005808.1 + 41988 0.69 0.465756
Target:  5'- uCCACG-GCGCu-GCUGGCCgacccgcagGCGGCc -3'
miRNA:   3'- cGGUGCaCGCGcuUGACCGGa--------UGUUG- -5'
26675 3' -54.6 NC_005808.1 + 30112 0.69 0.455513
Target:  5'- cGCCACuGUGCGCG-GCUGGUUcuCGAa -3'
miRNA:   3'- -CGGUG-CACGCGCuUGACCGGauGUUg -5'
26675 3' -54.6 NC_005808.1 + 11584 0.69 0.497173
Target:  5'- uGCCGCccaggGcCGCcGGCUGGCCgccggGCAGCa -3'
miRNA:   3'- -CGGUGca---C-GCGcUUGACCGGa----UGUUG- -5'
26675 3' -54.6 NC_005808.1 + 36102 0.69 0.476117
Target:  5'- aCUACGgcaagcGCGUGAAUgcgGGCCUGCGcgGCg -3'
miRNA:   3'- cGGUGCa-----CGCGCUUGa--CCGGAUGU--UG- -5'
26675 3' -54.6 NC_005808.1 + 16322 0.69 0.507857
Target:  5'- cGCgCGCGaUGCGCGAGCcgaccaGGCCgGCGGg -3'
miRNA:   3'- -CG-GUGC-ACGCGCUUGa-----CCGGaUGUUg -5'
26675 3' -54.6 NC_005808.1 + 37052 0.7 0.444388
Target:  5'- aGCCAUGcGCGUGAuugaccagaagcuGCcGGCCUGgAACu -3'
miRNA:   3'- -CGGUGCaCGCGCU-------------UGaCCGGAUgUUG- -5'
26675 3' -54.6 NC_005808.1 + 8873 0.7 0.4354
Target:  5'- cGCCACGaagcggGCGCGGGCaucauugugaaUGGCgCUAuCGGCg -3'
miRNA:   3'- -CGGUGCa-----CGCGCUUG-----------ACCG-GAU-GUUG- -5'
26675 3' -54.6 NC_005808.1 + 30588 0.71 0.351697
Target:  5'- gGCCACGgccGCGCu-GCUGGCCgACGu- -3'
miRNA:   3'- -CGGUGCa--CGCGcuUGACCGGaUGUug -5'
26675 3' -54.6 NC_005808.1 + 5620 0.71 0.387462
Target:  5'- aGCCACG-GCgucgauguugGCGAGgUGGCCguacACGGCg -3'
miRNA:   3'- -CGGUGCaCG----------CGCUUgACCGGa---UGUUG- -5'
26675 3' -54.6 NC_005808.1 + 2348 0.72 0.334713
Target:  5'- gGCgCGCGUGCGcCGcAAUUcGGCCUGCAc- -3'
miRNA:   3'- -CG-GUGCACGC-GC-UUGA-CCGGAUGUug -5'
26675 3' -54.6 NC_005808.1 + 31050 0.72 0.323999
Target:  5'- gGCCaACGUGCGCGAAggcccgaacaucaggGGCCUGguGCc -3'
miRNA:   3'- -CGG-UGCACGCGCUUga-------------CCGGAUguUG- -5'
26675 3' -54.6 NC_005808.1 + 10888 0.73 0.30257
Target:  5'- cCCGCGcGCgGCGGGCUGGUcaggcggugCUGCAGCa -3'
miRNA:   3'- cGGUGCaCG-CGCUUGACCG---------GAUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 12680 0.73 0.301798
Target:  5'- cCCACGgcacugaUGCGCGAACUGGU--ACGGCc -3'
miRNA:   3'- cGGUGC-------ACGCGCUUGACCGgaUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 15134 0.73 0.282982
Target:  5'- --uGCGUGCGCGGcgcgcuggcauaccaGCgccagGGCCUGCGGCc -3'
miRNA:   3'- cggUGCACGCGCU---------------UGa----CCGGAUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 39753 0.73 0.272857
Target:  5'- cGCUACG-GCuugGCGGGCUGGCCUuuccuCAAUa -3'
miRNA:   3'- -CGGUGCaCG---CGCUUGACCGGAu----GUUG- -5'
26675 3' -54.6 NC_005808.1 + 41457 0.73 0.272146
Target:  5'- cGCCGcCGUaGCGCGAGCUaacgguuacaccgGGCCgaugcGCGACa -3'
miRNA:   3'- -CGGU-GCA-CGCGCUUGA-------------CCGGa----UGUUG- -5'
26675 3' -54.6 NC_005808.1 + 8452 0.74 0.252143
Target:  5'- cGCgAUGUcgGCGuCGAGgUGGCCUGCGAUg -3'
miRNA:   3'- -CGgUGCA--CGC-GCUUgACCGGAUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 27746 0.74 0.239065
Target:  5'- cGCCcaGCGUGCG-GcGCUGGCCgcCAACg -3'
miRNA:   3'- -CGG--UGCACGCgCuUGACCGGauGUUG- -5'
26675 3' -54.6 NC_005808.1 + 32811 0.74 0.239065
Target:  5'- uCgGCGUGCGCGAcCUGGCCgcgUGgAACg -3'
miRNA:   3'- cGgUGCACGCGCUuGACCGG---AUgUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.