Results 61 - 67 of 67 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
26675 | 3' | -54.6 | NC_005808.1 | + | 4801 | 0.74 | 0.252143 |
Target: 5'- cGCCggcugGCGcUGCGgGAuuGCUGGCCgGCGACa -3' miRNA: 3'- -CGG-----UGC-ACGCgCU--UGACCGGaUGUUG- -5' |
|||||||
26675 | 3' | -54.6 | NC_005808.1 | + | 14033 | 0.75 | 0.208843 |
Target: 5'- gGCCgACGUGCGCGccgcgaUGGCCgGCGGCc -3' miRNA: 3'- -CGG-UGCACGCGCuug---ACCGGaUGUUG- -5' |
|||||||
26675 | 3' | -54.6 | NC_005808.1 | + | 5198 | 0.75 | 0.214611 |
Target: 5'- -gCugGUGCugGUGGuGCUGGCCUGCAACc -3' miRNA: 3'- cgGugCACG--CGCU-UGACCGGAUGUUG- -5' |
|||||||
26675 | 3' | -54.6 | NC_005808.1 | + | 25797 | 0.75 | 0.203208 |
Target: 5'- cGCCugG-GCGCGAccaACUGGCaacugGCGACc -3' miRNA: 3'- -CGGugCaCGCGCU---UGACCGga---UGUUG- -5' |
|||||||
26675 | 3' | -54.6 | NC_005808.1 | + | 37281 | 0.76 | 0.197706 |
Target: 5'- cGCCACGUGCuCGc---GGCCUACGGCc -3' miRNA: 3'- -CGGUGCACGcGCuugaCCGGAUGUUG- -5' |
|||||||
26675 | 3' | -54.6 | NC_005808.1 | + | 17918 | 0.79 | 0.115546 |
Target: 5'- aGCCugG-GCGUGGACgUGGCCcGCGGCg -3' miRNA: 3'- -CGGugCaCGCGCUUG-ACCGGaUGUUG- -5' |
|||||||
26675 | 3' | -54.6 | NC_005808.1 | + | 26549 | 1.11 | 0.000547 |
Target: 5'- gGCCACGUGCGCGAACUGGCCUACAACu -3' miRNA: 3'- -CGGUGCACGCGCUUGACCGGAUGUUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home