Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26675 | 3' | -54.6 | NC_005808.1 | + | 37052 | 0.7 | 0.444388 |
Target: 5'- aGCCAUGcGCGUGAuugaccagaagcuGCcGGCCUGgAACu -3' miRNA: 3'- -CGGUGCaCGCGCU-------------UGaCCGGAUgUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 30112 | 0.69 | 0.455513 |
Target: 5'- cGCCACuGUGCGCG-GCUGGUUcuCGAa -3' miRNA: 3'- -CGGUG-CACGCGCuUGACCGGauGUUg -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 12382 | 0.69 | 0.465756 |
Target: 5'- cGCCgaguGCGUGCGCGuGCUcaaGCCcgGCGGCu -3' miRNA: 3'- -CGG----UGCACGCGCuUGAc--CGGa-UGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 41988 | 0.69 | 0.465756 |
Target: 5'- uCCACG-GCGCu-GCUGGCCgacccgcagGCGGCc -3' miRNA: 3'- cGGUGCaCGCGcuUGACCGGa--------UGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 20316 | 0.69 | 0.476117 |
Target: 5'- gGCCGguUGCgauGCGGGCUGGCCUucaguggucguuGCGGCu -3' miRNA: 3'- -CGGUgcACG---CGCUUGACCGGA------------UGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 36102 | 0.69 | 0.476117 |
Target: 5'- aCUACGgcaagcGCGUGAAUgcgGGCCUGCGcgGCg -3' miRNA: 3'- cGGUGCa-----CGCGCUUGa--CCGGAUGU--UG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 2575 | 0.69 | 0.485538 |
Target: 5'- gGCCcagcGCGUGCGCGcGCUuGCCgcccuguUGCAACc -3' miRNA: 3'- -CGG----UGCACGCGCuUGAcCGG-------AUGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 42136 | 0.69 | 0.497173 |
Target: 5'- aCCGCGacaGCGCccgcaAGCUGGCCgcGCAGCa -3' miRNA: 3'- cGGUGCa--CGCGc----UUGACCGGa-UGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 11584 | 0.69 | 0.497173 |
Target: 5'- uGCCGCccaggGcCGCcGGCUGGCCgccggGCAGCa -3' miRNA: 3'- -CGGUGca---C-GCGcUUGACCGGa----UGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 16322 | 0.69 | 0.507857 |
Target: 5'- cGCgCGCGaUGCGCGAGCcgaccaGGCCgGCGGg -3' miRNA: 3'- -CG-GUGC-ACGCGCUUGa-----CCGGaUGUUg -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 7243 | 0.69 | 0.507857 |
Target: 5'- gGCCACuG-GCGCGGGCcgaugucgccGGCCUuguGCAGCu -3' miRNA: 3'- -CGGUG-CaCGCGCUUGa---------CCGGA---UGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 21180 | 0.68 | 0.518638 |
Target: 5'- gGCCuGC-UGCGCGGccugcuGCUGGUCUGCGc- -3' miRNA: 3'- -CGG-UGcACGCGCU------UGACCGGAUGUug -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 28565 | 0.68 | 0.518638 |
Target: 5'- gGCCAuCGcgGCGCGcACgucGGCCaccgGCAGCg -3' miRNA: 3'- -CGGU-GCa-CGCGCuUGa--CCGGa---UGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 31444 | 0.68 | 0.518638 |
Target: 5'- cGCaACGUGCGCaGGC-GGCCcaGCAGCa -3' miRNA: 3'- -CGgUGCACGCGcUUGaCCGGa-UGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 18867 | 0.68 | 0.529507 |
Target: 5'- cGCUGC-UGCGCGccaccgaggcACUGGCCcGCGACc -3' miRNA: 3'- -CGGUGcACGCGCu---------UGACCGGaUGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 608 | 0.68 | 0.54046 |
Target: 5'- cGCCAUGUcgGCGAugaUGGCCU-CAGCc -3' miRNA: 3'- -CGGUGCAcgCGCUug-ACCGGAuGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 19483 | 0.68 | 0.54046 |
Target: 5'- cGCCAgGUGCcgGUGGGCaGGCCgcUGCGAa -3' miRNA: 3'- -CGGUgCACG--CGCUUGaCCGG--AUGUUg -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 21439 | 0.68 | 0.547068 |
Target: 5'- gGCCGCGcuguugaaccaggGCGCGGACacggcGGCCaagcuggGCAGCg -3' miRNA: 3'- -CGGUGCa------------CGCGCUUGa----CCGGa------UGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 30034 | 0.68 | 0.551487 |
Target: 5'- cGCCGCGcaGCGCGA---GGCCgGCAAg -3' miRNA: 3'- -CGGUGCa-CGCGCUugaCCGGaUGUUg -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 25535 | 0.68 | 0.56147 |
Target: 5'- cGCCuuCGUGCGCGAGgUgaaggauucGGCCaagaaggUGCGGCu -3' miRNA: 3'- -CGGu-GCACGCGCUUgA---------CCGG-------AUGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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