miRNA display CGI


Results 41 - 60 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26675 3' -54.6 NC_005808.1 + 23291 0.68 0.562583
Target:  5'- cGCCACGaaugccuguuUGCGgcCGGcACUGGCCgggAUGACg -3'
miRNA:   3'- -CGGUGC----------ACGC--GCU-UGACCGGa--UGUUG- -5'
26675 3' -54.6 NC_005808.1 + 38763 0.68 0.562583
Target:  5'- cGCaaaGUGCGCuGGAUUGGUC-GCAACg -3'
miRNA:   3'- -CGgugCACGCG-CUUGACCGGaUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 13173 0.68 0.567038
Target:  5'- cGCgACGUGCgagcgcgugggcaacGCGcccaagauucuGCUGGCCUACcGCg -3'
miRNA:   3'- -CGgUGCACG---------------CGCu----------UGACCGGAUGuUG- -5'
26675 3' -54.6 NC_005808.1 + 18463 0.67 0.573737
Target:  5'- gGCCAgGcGCGCagccGGCUGGaCUACGACc -3'
miRNA:   3'- -CGGUgCaCGCGc---UUGACCgGAUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 35739 0.67 0.584941
Target:  5'- uGCCgACGUG-GUGGGg-GGCCUACGAa -3'
miRNA:   3'- -CGG-UGCACgCGCUUgaCCGGAUGUUg -5'
26675 3' -54.6 NC_005808.1 + 39662 0.67 0.584941
Target:  5'- uGCCGCGcGaCGCGGugUgGGCCgGCAu- -3'
miRNA:   3'- -CGGUGCaC-GCGCUugA-CCGGaUGUug -5'
26675 3' -54.6 NC_005808.1 + 17241 0.67 0.595062
Target:  5'- uGCC-CGgugGCcggcuauGCGAACUGGCCggccuggACAAUc -3'
miRNA:   3'- -CGGuGCa--CG-------CGCUUGACCGGa------UGUUG- -5'
26675 3' -54.6 NC_005808.1 + 22318 0.67 0.596188
Target:  5'- cGCUACugGUGCGgGcAACgacGGCCaACAGCa -3'
miRNA:   3'- -CGGUG--CACGCgC-UUGa--CCGGaUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 10088 0.67 0.596188
Target:  5'- aGCCugcACGgGCGCGGAguuCUcGGCCUugGAUu -3'
miRNA:   3'- -CGG---UGCaCGCGCUU---GA-CCGGAugUUG- -5'
26675 3' -54.6 NC_005808.1 + 13248 0.67 0.596188
Target:  5'- gGCCAcCG-GCGCGugguucgagGACuUGGCCgGCGACc -3'
miRNA:   3'- -CGGU-GCaCGCGC---------UUG-ACCGGaUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 33400 0.67 0.630081
Target:  5'- cGCCGCGccGC-CGAGCaGGCCaacgucgACGGCg -3'
miRNA:   3'- -CGGUGCa-CGcGCUUGaCCGGa------UGUUG- -5'
26675 3' -54.6 NC_005808.1 + 28392 0.67 0.630081
Target:  5'- aGCCGCGcUGCGC---CUGaCCUAUGACa -3'
miRNA:   3'- -CGGUGC-ACGCGcuuGACcGGAUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 26333 0.67 0.630081
Target:  5'- -aCGCGcacCGCGAACUGGCCgcGCcGCu -3'
miRNA:   3'- cgGUGCac-GCGCUUGACCGGa-UGuUG- -5'
26675 3' -54.6 NC_005808.1 + 26827 0.66 0.641397
Target:  5'- uGCCGuCGUGCGuCGcaccAUUGGCg-GCAACg -3'
miRNA:   3'- -CGGU-GCACGC-GCu---UGACCGgaUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 39770 0.66 0.641397
Target:  5'- cGCCgcugcGCGUGgcCGCGAGCaccUGGCCcgACGAa -3'
miRNA:   3'- -CGG-----UGCAC--GCGCUUG---ACCGGa-UGUUg -5'
26675 3' -54.6 NC_005808.1 + 42192 0.66 0.641397
Target:  5'- cGCgACGUGCugcucaacagucGCGcGCUGGCCgcgcuCAAUc -3'
miRNA:   3'- -CGgUGCACG------------CGCuUGACCGGau---GUUG- -5'
26675 3' -54.6 NC_005808.1 + 25194 0.66 0.652704
Target:  5'- uGUCAUGagcacGCGCGAccGCUGGCC--CGGCu -3'
miRNA:   3'- -CGGUGCa----CGCGCU--UGACCGGauGUUG- -5'
26675 3' -54.6 NC_005808.1 + 33102 0.66 0.652704
Target:  5'- cGCCACG-GCG-GAACaGGCUgGCAugACg -3'
miRNA:   3'- -CGGUGCaCGCgCUUGaCCGGaUGU--UG- -5'
26675 3' -54.6 NC_005808.1 + 25616 0.66 0.66399
Target:  5'- aCCACGgcgGCGCGGuc--GCCaGCAGCg -3'
miRNA:   3'- cGGUGCa--CGCGCUugacCGGaUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 28874 0.66 0.66399
Target:  5'- cGCCACGUccucgcugcugGCGUaguuGCUGGCCgucgcCGACc -3'
miRNA:   3'- -CGGUGCA-----------CGCGcu--UGACCGGau---GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.