miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26675 3' -54.6 NC_005808.1 + 16322 0.69 0.507857
Target:  5'- cGCgCGCGaUGCGCGAGCcgaccaGGCCgGCGGg -3'
miRNA:   3'- -CG-GUGC-ACGCGCUUGa-----CCGGaUGUUg -5'
26675 3' -54.6 NC_005808.1 + 17241 0.67 0.595062
Target:  5'- uGCC-CGgugGCcggcuauGCGAACUGGCCggccuggACAAUc -3'
miRNA:   3'- -CGGuGCa--CG-------CGCUUGACCGGa------UGUUG- -5'
26675 3' -54.6 NC_005808.1 + 17918 0.79 0.115546
Target:  5'- aGCCugG-GCGUGGACgUGGCCcGCGGCg -3'
miRNA:   3'- -CGGugCaCGCGCUUG-ACCGGaUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 18463 0.67 0.573737
Target:  5'- gGCCAgGcGCGCagccGGCUGGaCUACGACc -3'
miRNA:   3'- -CGGUgCaCGCGc---UUGACCgGAUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 18867 0.68 0.529507
Target:  5'- cGCUGC-UGCGCGccaccgaggcACUGGCCcGCGACc -3'
miRNA:   3'- -CGGUGcACGCGCu---------UGACCGGaUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 19483 0.68 0.54046
Target:  5'- cGCCAgGUGCcgGUGGGCaGGCCgcUGCGAa -3'
miRNA:   3'- -CGGUgCACG--CGCUUGaCCGG--AUGUUg -5'
26675 3' -54.6 NC_005808.1 + 20316 0.69 0.476117
Target:  5'- gGCCGguUGCgauGCGGGCUGGCCUucaguggucguuGCGGCu -3'
miRNA:   3'- -CGGUgcACG---CGCUUGACCGGA------------UGUUG- -5'
26675 3' -54.6 NC_005808.1 + 21180 0.68 0.518638
Target:  5'- gGCCuGC-UGCGCGGccugcuGCUGGUCUGCGc- -3'
miRNA:   3'- -CGG-UGcACGCGCU------UGACCGGAUGUug -5'
26675 3' -54.6 NC_005808.1 + 21439 0.68 0.547068
Target:  5'- gGCCGCGcuguugaaccaggGCGCGGACacggcGGCCaagcuggGCAGCg -3'
miRNA:   3'- -CGGUGCa------------CGCGCUUGa----CCGGa------UGUUG- -5'
26675 3' -54.6 NC_005808.1 + 22318 0.67 0.596188
Target:  5'- cGCUACugGUGCGgGcAACgacGGCCaACAGCa -3'
miRNA:   3'- -CGGUG--CACGCgC-UUGa--CCGGaUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 23291 0.68 0.562583
Target:  5'- cGCCACGaaugccuguuUGCGgcCGGcACUGGCCgggAUGACg -3'
miRNA:   3'- -CGGUGC----------ACGC--GCU-UGACCGGa--UGUUG- -5'
26675 3' -54.6 NC_005808.1 + 24140 0.66 0.686457
Target:  5'- aGCCGgcUGCGCGc-CUGGCC--CAGCg -3'
miRNA:   3'- -CGGUgcACGCGCuuGACCGGauGUUG- -5'
26675 3' -54.6 NC_005808.1 + 25194 0.66 0.652704
Target:  5'- uGUCAUGagcacGCGCGAccGCUGGCC--CGGCu -3'
miRNA:   3'- -CGGUGCa----CGCGCU--UGACCGGauGUUG- -5'
26675 3' -54.6 NC_005808.1 + 25535 0.68 0.56147
Target:  5'- cGCCuuCGUGCGCGAGgUgaaggauucGGCCaagaaggUGCGGCu -3'
miRNA:   3'- -CGGu-GCACGCGCUUgA---------CCGG-------AUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 25616 0.66 0.66399
Target:  5'- aCCACGgcgGCGCGGuc--GCCaGCAGCg -3'
miRNA:   3'- cGGUGCa--CGCGCUugacCGGaUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 25797 0.75 0.203208
Target:  5'- cGCCugG-GCGCGAccaACUGGCaacugGCGACc -3'
miRNA:   3'- -CGGugCaCGCGCU---UGACCGga---UGUUG- -5'
26675 3' -54.6 NC_005808.1 + 26333 0.67 0.630081
Target:  5'- -aCGCGcacCGCGAACUGGCCgcGCcGCu -3'
miRNA:   3'- cgGUGCac-GCGCUUGACCGGa-UGuUG- -5'
26675 3' -54.6 NC_005808.1 + 26549 1.11 0.000547
Target:  5'- gGCCACGUGCGCGAACUGGCCUACAACu -3'
miRNA:   3'- -CGGUGCACGCGCUUGACCGGAUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 26827 0.66 0.641397
Target:  5'- uGCCGuCGUGCGuCGcaccAUUGGCg-GCAACg -3'
miRNA:   3'- -CGGU-GCACGC-GCu---UGACCGgaUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 27746 0.74 0.239065
Target:  5'- cGCCcaGCGUGCG-GcGCUGGCCgcCAACg -3'
miRNA:   3'- -CGG--UGCACGCgCuUGACCGGauGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.