miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26675 3' -54.6 NC_005808.1 + 42192 0.66 0.641397
Target:  5'- cGCgACGUGCugcucaacagucGCGcGCUGGCCgcgcuCAAUc -3'
miRNA:   3'- -CGgUGCACG------------CGCuUGACCGGau---GUUG- -5'
26675 3' -54.6 NC_005808.1 + 42136 0.69 0.497173
Target:  5'- aCCGCGacaGCGCccgcaAGCUGGCCgcGCAGCa -3'
miRNA:   3'- cGGUGCa--CGCGc----UUGACCGGa-UGUUG- -5'
26675 3' -54.6 NC_005808.1 + 41988 0.69 0.465756
Target:  5'- uCCACG-GCGCu-GCUGGCCgacccgcagGCGGCc -3'
miRNA:   3'- cGGUGCaCGCGcuUGACCGGa--------UGUUG- -5'
26675 3' -54.6 NC_005808.1 + 41457 0.73 0.272146
Target:  5'- cGCCGcCGUaGCGCGAGCUaacgguuacaccgGGCCgaugcGCGACa -3'
miRNA:   3'- -CGGU-GCA-CGCGCUUGA-------------CCGGa----UGUUG- -5'
26675 3' -54.6 NC_005808.1 + 39770 0.66 0.641397
Target:  5'- cGCCgcugcGCGUGgcCGCGAGCaccUGGCCcgACGAa -3'
miRNA:   3'- -CGG-----UGCAC--GCGCUUG---ACCGGa-UGUUg -5'
26675 3' -54.6 NC_005808.1 + 39753 0.73 0.272857
Target:  5'- cGCUACG-GCuugGCGGGCUGGCCUuuccuCAAUa -3'
miRNA:   3'- -CGGUGCaCG---CGCUUGACCGGAu----GUUG- -5'
26675 3' -54.6 NC_005808.1 + 39662 0.67 0.584941
Target:  5'- uGCCGCGcGaCGCGGugUgGGCCgGCAu- -3'
miRNA:   3'- -CGGUGCaC-GCGCUugA-CCGGaUGUug -5'
26675 3' -54.6 NC_005808.1 + 38763 0.68 0.562583
Target:  5'- cGCaaaGUGCGCuGGAUUGGUC-GCAACg -3'
miRNA:   3'- -CGgugCACGCG-CUUGACCGGaUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 38721 0.66 0.686457
Target:  5'- gGCgACG-GCaGCGc---GGCCUACAGCg -3'
miRNA:   3'- -CGgUGCaCG-CGCuugaCCGGAUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 37281 0.76 0.197706
Target:  5'- cGCCACGUGCuCGc---GGCCUACGGCc -3'
miRNA:   3'- -CGGUGCACGcGCuugaCCGGAUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 37052 0.7 0.444388
Target:  5'- aGCCAUGcGCGUGAuugaccagaagcuGCcGGCCUGgAACu -3'
miRNA:   3'- -CGGUGCaCGCGCU-------------UGaCCGGAUgUUG- -5'
26675 3' -54.6 NC_005808.1 + 36102 0.69 0.476117
Target:  5'- aCUACGgcaagcGCGUGAAUgcgGGCCUGCGcgGCg -3'
miRNA:   3'- cGGUGCa-----CGCGCUUGa--CCGGAUGU--UG- -5'
26675 3' -54.6 NC_005808.1 + 35739 0.67 0.584941
Target:  5'- uGCCgACGUG-GUGGGg-GGCCUACGAa -3'
miRNA:   3'- -CGG-UGCACgCGCUUgaCCGGAUGUUg -5'
26675 3' -54.6 NC_005808.1 + 34978 0.66 0.686457
Target:  5'- gGCCACGUguccggcgcuGCGCGAccacguGCUGuccaccgucGCCgACGACu -3'
miRNA:   3'- -CGGUGCA----------CGCGCU------UGAC---------CGGaUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 34022 0.66 0.66399
Target:  5'- gGCCGCacGCGC-----GGCCUACGACg -3'
miRNA:   3'- -CGGUGcaCGCGcuugaCCGGAUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 33400 0.67 0.630081
Target:  5'- cGCCGCGccGC-CGAGCaGGCCaacgucgACGGCg -3'
miRNA:   3'- -CGGUGCa-CGcGCUUGaCCGGa------UGUUG- -5'
26675 3' -54.6 NC_005808.1 + 33102 0.66 0.652704
Target:  5'- cGCCACG-GCG-GAACaGGCUgGCAugACg -3'
miRNA:   3'- -CGGUGCaCGCgCUUGaCCGGaUGU--UG- -5'
26675 3' -54.6 NC_005808.1 + 32811 0.74 0.239065
Target:  5'- uCgGCGUGCGCGAcCUGGCCgcgUGgAACg -3'
miRNA:   3'- cGgUGCACGCGCUuGACCGG---AUgUUG- -5'
26675 3' -54.6 NC_005808.1 + 31444 0.68 0.518638
Target:  5'- cGCaACGUGCGCaGGC-GGCCcaGCAGCa -3'
miRNA:   3'- -CGgUGCACGCGcUUGaCCGGa-UGUUG- -5'
26675 3' -54.6 NC_005808.1 + 31050 0.72 0.323999
Target:  5'- gGCCaACGUGCGCGAAggcccgaacaucaggGGCCUGguGCc -3'
miRNA:   3'- -CGG-UGCACGCGCUUga-------------CCGGAUguUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.