Results 61 - 67 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26675 | 3' | -54.6 | NC_005808.1 | + | 5198 | 0.75 | 0.214611 |
Target: 5'- -gCugGUGCugGUGGuGCUGGCCUGCAACc -3' miRNA: 3'- cgGugCACG--CGCU-UGACCGGAUGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 5105 | 0.66 | 0.66399 |
Target: 5'- gGCCcaGCGUccgGUGCG-GCUGGCgccguugaaCUGCAACg -3' miRNA: 3'- -CGG--UGCA---CGCGCuUGACCG---------GAUGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 4801 | 0.74 | 0.252143 |
Target: 5'- cGCCggcugGCGcUGCGgGAuuGCUGGCCgGCGACa -3' miRNA: 3'- -CGG-----UGC-ACGCgCU--UGACCGGaUGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 4044 | 0.66 | 0.686457 |
Target: 5'- gGCCGCG---GCGAGCggcaGGCCaGCGGCc -3' miRNA: 3'- -CGGUGCacgCGCUUGa---CCGGaUGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 2575 | 0.69 | 0.485538 |
Target: 5'- gGCCcagcGCGUGCGCGcGCUuGCCgcccuguUGCAACc -3' miRNA: 3'- -CGG----UGCACGCGCuUGAcCGG-------AUGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 2348 | 0.72 | 0.334713 |
Target: 5'- gGCgCGCGUGCGcCGcAAUUcGGCCUGCAc- -3' miRNA: 3'- -CG-GUGCACGC-GC-UUGA-CCGGAUGUug -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 608 | 0.68 | 0.54046 |
Target: 5'- cGCCAUGUcgGCGAugaUGGCCU-CAGCc -3' miRNA: 3'- -CGGUGCAcgCGCUug-ACCGGAuGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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