miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26675 3' -54.6 NC_005808.1 + 20316 0.69 0.476117
Target:  5'- gGCCGguUGCgauGCGGGCUGGCCUucaguggucguuGCGGCu -3'
miRNA:   3'- -CGGUgcACG---CGCUUGACCGGA------------UGUUG- -5'
26675 3' -54.6 NC_005808.1 + 36102 0.69 0.476117
Target:  5'- aCUACGgcaagcGCGUGAAUgcgGGCCUGCGcgGCg -3'
miRNA:   3'- cGGUGCa-----CGCGCUUGa--CCGGAUGU--UG- -5'
26675 3' -54.6 NC_005808.1 + 11584 0.69 0.497173
Target:  5'- uGCCGCccaggGcCGCcGGCUGGCCgccggGCAGCa -3'
miRNA:   3'- -CGGUGca---C-GCGcUUGACCGGa----UGUUG- -5'
26675 3' -54.6 NC_005808.1 + 21180 0.68 0.518638
Target:  5'- gGCCuGC-UGCGCGGccugcuGCUGGUCUGCGc- -3'
miRNA:   3'- -CGG-UGcACGCGCU------UGACCGGAUGUug -5'
26675 3' -54.6 NC_005808.1 + 39753 0.73 0.272857
Target:  5'- cGCUACG-GCuugGCGGGCUGGCCUuuccuCAAUa -3'
miRNA:   3'- -CGGUGCaCG---CGCUUGACCGGAu----GUUG- -5'
26675 3' -54.6 NC_005808.1 + 15134 0.73 0.282982
Target:  5'- --uGCGUGCGCGGcgcgcuggcauaccaGCgccagGGCCUGCGGCc -3'
miRNA:   3'- cggUGCACGCGCU---------------UGa----CCGGAUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 12680 0.73 0.301798
Target:  5'- cCCACGgcacugaUGCGCGAACUGGU--ACGGCc -3'
miRNA:   3'- cGGUGC-------ACGCGCUUGACCGgaUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 10888 0.73 0.30257
Target:  5'- cCCGCGcGCgGCGGGCUGGUcaggcggugCUGCAGCa -3'
miRNA:   3'- cGGUGCaCG-CGCUUGACCG---------GAUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 30588 0.71 0.351697
Target:  5'- gGCCACGgccGCGCu-GCUGGCCgACGu- -3'
miRNA:   3'- -CGGUGCa--CGCGcuUGACCGGaUGUug -5'
26675 3' -54.6 NC_005808.1 + 30112 0.69 0.455513
Target:  5'- cGCCACuGUGCGCG-GCUGGUUcuCGAa -3'
miRNA:   3'- -CGGUG-CACGCGCuUGACCGGauGUUg -5'
26675 3' -54.6 NC_005808.1 + 41988 0.69 0.465756
Target:  5'- uCCACG-GCGCu-GCUGGCCgacccgcagGCGGCc -3'
miRNA:   3'- cGGUGCaCGCGcuUGACCGGa--------UGUUG- -5'
26675 3' -54.6 NC_005808.1 + 41457 0.73 0.272146
Target:  5'- cGCCGcCGUaGCGCGAGCUaacgguuacaccgGGCCgaugcGCGACa -3'
miRNA:   3'- -CGGU-GCA-CGCGCUUGA-------------CCGGa----UGUUG- -5'
26675 3' -54.6 NC_005808.1 + 8452 0.74 0.252143
Target:  5'- cGCgAUGUcgGCGuCGAGgUGGCCUGCGAUg -3'
miRNA:   3'- -CGgUGCA--CGC-GCUUgACCGGAUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 32811 0.74 0.239065
Target:  5'- uCgGCGUGCGCGAcCUGGCCgcgUGgAACg -3'
miRNA:   3'- cGgUGCACGCGCUuGACCGG---AUgUUG- -5'
26675 3' -54.6 NC_005808.1 + 27746 0.74 0.239065
Target:  5'- cGCCcaGCGUGCG-GcGCUGGCCgcCAACg -3'
miRNA:   3'- -CGG--UGCACGCgCuUGACCGGauGUUG- -5'
26675 3' -54.6 NC_005808.1 + 5198 0.75 0.214611
Target:  5'- -gCugGUGCugGUGGuGCUGGCCUGCAACc -3'
miRNA:   3'- cgGugCACG--CGCU-UGACCGGAUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 14033 0.75 0.208843
Target:  5'- gGCCgACGUGCGCGccgcgaUGGCCgGCGGCc -3'
miRNA:   3'- -CGG-UGCACGCGCuug---ACCGGaUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 25797 0.75 0.203208
Target:  5'- cGCCugG-GCGCGAccaACUGGCaacugGCGACc -3'
miRNA:   3'- -CGGugCaCGCGCU---UGACCGga---UGUUG- -5'
26675 3' -54.6 NC_005808.1 + 17918 0.79 0.115546
Target:  5'- aGCCugG-GCGUGGACgUGGCCcGCGGCg -3'
miRNA:   3'- -CGGugCaCGCGCUUG-ACCGGaUGUUG- -5'
26675 3' -54.6 NC_005808.1 + 38721 0.66 0.686457
Target:  5'- gGCgACG-GCaGCGc---GGCCUACAGCg -3'
miRNA:   3'- -CGgUGCaCG-CGCuugaCCGGAUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.