Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26675 | 3' | -54.6 | NC_005808.1 | + | 35739 | 0.67 | 0.584941 |
Target: 5'- uGCCgACGUG-GUGGGg-GGCCUACGAa -3' miRNA: 3'- -CGG-UGCACgCGCUUgaCCGGAUGUUg -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 18463 | 0.67 | 0.573737 |
Target: 5'- gGCCAgGcGCGCagccGGCUGGaCUACGACc -3' miRNA: 3'- -CGGUgCaCGCGc---UUGACCgGAUGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 608 | 0.68 | 0.54046 |
Target: 5'- cGCCAUGUcgGCGAugaUGGCCU-CAGCc -3' miRNA: 3'- -CGGUGCAcgCGCUug-ACCGGAuGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 16322 | 0.69 | 0.507857 |
Target: 5'- cGCgCGCGaUGCGCGAGCcgaccaGGCCgGCGGg -3' miRNA: 3'- -CG-GUGC-ACGCGCUUGa-----CCGGaUGUUg -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 5105 | 0.66 | 0.66399 |
Target: 5'- gGCCcaGCGUccgGUGCG-GCUGGCgccguugaaCUGCAACg -3' miRNA: 3'- -CGG--UGCA---CGCGCuUGACCG---------GAUGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 28392 | 0.67 | 0.630081 |
Target: 5'- aGCCGCGcUGCGC---CUGaCCUAUGACa -3' miRNA: 3'- -CGGUGC-ACGCGcuuGACcGGAUGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 25535 | 0.68 | 0.56147 |
Target: 5'- cGCCuuCGUGCGCGAGgUgaaggauucGGCCaagaaggUGCGGCu -3' miRNA: 3'- -CGGu-GCACGCGCUUgA---------CCGG-------AUGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 7243 | 0.69 | 0.507857 |
Target: 5'- gGCCACuG-GCGCGGGCcgaugucgccGGCCUuguGCAGCu -3' miRNA: 3'- -CGGUG-CaCGCGCUUGa---------CCGGA---UGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 22318 | 0.67 | 0.596188 |
Target: 5'- cGCUACugGUGCGgGcAACgacGGCCaACAGCa -3' miRNA: 3'- -CGGUG--CACGCgC-UUGa--CCGGaUGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 42136 | 0.69 | 0.497173 |
Target: 5'- aCCGCGacaGCGCccgcaAGCUGGCCgcGCAGCa -3' miRNA: 3'- cGGUGCa--CGCGc----UUGACCGGa-UGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 13173 | 0.68 | 0.567038 |
Target: 5'- cGCgACGUGCgagcgcgugggcaacGCGcccaagauucuGCUGGCCUACcGCg -3' miRNA: 3'- -CGgUGCACG---------------CGCu----------UGACCGGAUGuUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 17241 | 0.67 | 0.595062 |
Target: 5'- uGCC-CGgugGCcggcuauGCGAACUGGCCggccuggACAAUc -3' miRNA: 3'- -CGGuGCa--CG-------CGCUUGACCGGa------UGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 30034 | 0.68 | 0.551487 |
Target: 5'- cGCCGCGcaGCGCGA---GGCCgGCAAg -3' miRNA: 3'- -CGGUGCa-CGCGCUugaCCGGaUGUUg -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 21439 | 0.68 | 0.547068 |
Target: 5'- gGCCGCGcuguugaaccaggGCGCGGACacggcGGCCaagcuggGCAGCg -3' miRNA: 3'- -CGGUGCa------------CGCGCUUGa----CCGGa------UGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 18867 | 0.68 | 0.529507 |
Target: 5'- cGCUGC-UGCGCGccaccgaggcACUGGCCcGCGACc -3' miRNA: 3'- -CGGUGcACGCGCu---------UGACCGGaUGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 31444 | 0.68 | 0.518638 |
Target: 5'- cGCaACGUGCGCaGGC-GGCCcaGCAGCa -3' miRNA: 3'- -CGgUGCACGCGcUUGaCCGGa-UGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 38721 | 0.66 | 0.686457 |
Target: 5'- gGCgACG-GCaGCGc---GGCCUACAGCg -3' miRNA: 3'- -CGgUGCaCG-CGCuugaCCGGAUGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 34022 | 0.66 | 0.66399 |
Target: 5'- gGCCGCacGCGC-----GGCCUACGACg -3' miRNA: 3'- -CGGUGcaCGCGcuugaCCGGAUGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 33102 | 0.66 | 0.652704 |
Target: 5'- cGCCACG-GCG-GAACaGGCUgGCAugACg -3' miRNA: 3'- -CGGUGCaCGCgCUUGaCCGGaUGU--UG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 33400 | 0.67 | 0.630081 |
Target: 5'- cGCCGCGccGC-CGAGCaGGCCaacgucgACGGCg -3' miRNA: 3'- -CGGUGCa-CGcGCUUGaCCGGa------UGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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