Results 41 - 60 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26675 | 3' | -54.6 | NC_005808.1 | + | 25797 | 0.75 | 0.203208 |
Target: 5'- cGCCugG-GCGCGAccaACUGGCaacugGCGACc -3' miRNA: 3'- -CGGugCaCGCGCU---UGACCGga---UGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 17918 | 0.79 | 0.115546 |
Target: 5'- aGCCugG-GCGUGGACgUGGCCcGCGGCg -3' miRNA: 3'- -CGGugCaCGCGCUUG-ACCGGaUGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 26549 | 1.11 | 0.000547 |
Target: 5'- gGCCACGUGCGCGAACUGGCCUACAACu -3' miRNA: 3'- -CGGUGCACGCGCUUGACCGGAUGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 11584 | 0.69 | 0.497173 |
Target: 5'- uGCCGCccaggGcCGCcGGCUGGCCgccggGCAGCa -3' miRNA: 3'- -CGGUGca---C-GCGcUUGACCGGa----UGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 36102 | 0.69 | 0.476117 |
Target: 5'- aCUACGgcaagcGCGUGAAUgcgGGCCUGCGcgGCg -3' miRNA: 3'- cGGUGCa-----CGCGCUUGa--CCGGAUGU--UG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 37052 | 0.7 | 0.444388 |
Target: 5'- aGCCAUGcGCGUGAuugaccagaagcuGCcGGCCUGgAACu -3' miRNA: 3'- -CGGUGCaCGCGCU-------------UGaCCGGAUgUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 8873 | 0.7 | 0.4354 |
Target: 5'- cGCCACGaagcggGCGCGGGCaucauugugaaUGGCgCUAuCGGCg -3' miRNA: 3'- -CGGUGCa-----CGCGCUUG-----------ACCG-GAU-GUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 5620 | 0.71 | 0.387462 |
Target: 5'- aGCCACG-GCgucgauguugGCGAGgUGGCCguacACGGCg -3' miRNA: 3'- -CGGUGCaCG----------CGCUUgACCGGa---UGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 31050 | 0.72 | 0.323999 |
Target: 5'- gGCCaACGUGCGCGAAggcccgaacaucaggGGCCUGguGCc -3' miRNA: 3'- -CGG-UGCACGCGCUUga-------------CCGGAUguUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 21180 | 0.68 | 0.518638 |
Target: 5'- gGCCuGC-UGCGCGGccugcuGCUGGUCUGCGc- -3' miRNA: 3'- -CGG-UGcACGCGCU------UGACCGGAUGUug -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 28565 | 0.68 | 0.518638 |
Target: 5'- gGCCAuCGcgGCGCGcACgucGGCCaccgGCAGCg -3' miRNA: 3'- -CGGU-GCa-CGCGCuUGa--CCGGa---UGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 24140 | 0.66 | 0.686457 |
Target: 5'- aGCCGgcUGCGCGc-CUGGCC--CAGCg -3' miRNA: 3'- -CGGUgcACGCGCuuGACCGGauGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 28874 | 0.66 | 0.66399 |
Target: 5'- cGCCACGUccucgcugcugGCGUaguuGCUGGCCgucgcCGACc -3' miRNA: 3'- -CGGUGCA-----------CGCGcu--UGACCGGau---GUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 25616 | 0.66 | 0.66399 |
Target: 5'- aCCACGgcgGCGCGGuc--GCCaGCAGCg -3' miRNA: 3'- cGGUGCa--CGCGCUugacCGGaUGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 25194 | 0.66 | 0.652704 |
Target: 5'- uGUCAUGagcacGCGCGAccGCUGGCC--CGGCu -3' miRNA: 3'- -CGGUGCa----CGCGCU--UGACCGGauGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 42192 | 0.66 | 0.641397 |
Target: 5'- cGCgACGUGCugcucaacagucGCGcGCUGGCCgcgcuCAAUc -3' miRNA: 3'- -CGgUGCACG------------CGCuUGACCGGau---GUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 39770 | 0.66 | 0.641397 |
Target: 5'- cGCCgcugcGCGUGgcCGCGAGCaccUGGCCcgACGAa -3' miRNA: 3'- -CGG-----UGCAC--GCGCUUG---ACCGGa-UGUUg -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 38763 | 0.68 | 0.562583 |
Target: 5'- cGCaaaGUGCGCuGGAUUGGUC-GCAACg -3' miRNA: 3'- -CGgugCACGCG-CUUGACCGGaUGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 23291 | 0.68 | 0.562583 |
Target: 5'- cGCCACGaaugccuguuUGCGgcCGGcACUGGCCgggAUGACg -3' miRNA: 3'- -CGGUGC----------ACGC--GCU-UGACCGGa--UGUUG- -5' |
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26675 | 3' | -54.6 | NC_005808.1 | + | 19483 | 0.68 | 0.54046 |
Target: 5'- cGCCAgGUGCcgGUGGGCaGGCCgcUGCGAa -3' miRNA: 3'- -CGGUgCACG--CGCUUGaCCGG--AUGUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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