miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26675 5' -56.1 NC_005808.1 + 4815 0.66 0.63834
Target:  5'- gCGGgaUUGcUgGCCGGCGACagGUCgCCg -3'
miRNA:   3'- -GCCaaAGC-AgUGGCCGCUGgaCAG-GG- -5'
26675 5' -56.1 NC_005808.1 + 23250 0.66 0.63834
Target:  5'- aCGGcaauucCGcCGCCuGGCG-CCUGUCCg -3'
miRNA:   3'- -GCCaaa---GCaGUGG-CCGCuGGACAGGg -5'
26675 5' -56.1 NC_005808.1 + 25323 0.66 0.63834
Target:  5'- cCGGcgcUCGUCGCCGG-GA-UUGUCCa -3'
miRNA:   3'- -GCCaa-AGCAGUGGCCgCUgGACAGGg -5'
26675 5' -56.1 NC_005808.1 + 6828 0.66 0.63834
Target:  5'- gGGUUUCGUCGuugcccUCGGCGACg-G-CCUu -3'
miRNA:   3'- gCCAAAGCAGU------GGCCGCUGgaCaGGG- -5'
26675 5' -56.1 NC_005808.1 + 30374 0.66 0.616421
Target:  5'- -----cUGUUGCCGGUGugCUgcGUCCCg -3'
miRNA:   3'- gccaaaGCAGUGGCCGCugGA--CAGGG- -5'
26675 5' -56.1 NC_005808.1 + 12896 0.66 0.616421
Target:  5'- uGGUgUCGUCGCCuuuGGCGaugcgcucgGCCgcgCCCa -3'
miRNA:   3'- gCCAaAGCAGUGG---CCGC---------UGGacaGGG- -5'
26675 5' -56.1 NC_005808.1 + 9063 0.67 0.583666
Target:  5'- cCGGaUUCGcCAgCGGUGGCC-GUgCCg -3'
miRNA:   3'- -GCCaAAGCaGUgGCCGCUGGaCAgGG- -5'
26675 5' -56.1 NC_005808.1 + 9015 0.67 0.583666
Target:  5'- cCGGaUUCGcCAgCGGUGGCC-GUgCCg -3'
miRNA:   3'- -GCCaAAGCaGUgGCCGCUGGaCAgGG- -5'
26675 5' -56.1 NC_005808.1 + 8950 0.67 0.583666
Target:  5'- cCGGaUUCGcCAgCGGUGGCC-GUgCCg -3'
miRNA:   3'- -GCCaAAGCaGUgGCCGCUGGaCAgGG- -5'
26675 5' -56.1 NC_005808.1 + 14415 0.67 0.583666
Target:  5'- uGGg--CGUCGCCaGGCGcGCCUGcggCaCCg -3'
miRNA:   3'- gCCaaaGCAGUGG-CCGC-UGGACa--G-GG- -5'
26675 5' -56.1 NC_005808.1 + 12023 0.67 0.583666
Target:  5'- gCGGc--CGUgGCCGGCGAgguCUUG-CCCa -3'
miRNA:   3'- -GCCaaaGCAgUGGCCGCU---GGACaGGG- -5'
26675 5' -56.1 NC_005808.1 + 30988 0.67 0.572817
Target:  5'- aCGGUggaCGaUCugCucacgcGCGACCUGUCCa -3'
miRNA:   3'- -GCCAaa-GC-AGugGc-----CGCUGGACAGGg -5'
26675 5' -56.1 NC_005808.1 + 34562 0.67 0.570652
Target:  5'- gCGGUUgagcgucgaggcUGUCACCGGCGAagCUGgcgCCa -3'
miRNA:   3'- -GCCAAa-----------GCAGUGGCCGCUg-GACa--GGg -5'
26675 5' -56.1 NC_005808.1 + 18460 0.68 0.540588
Target:  5'- aCGGUcgCGgCGCCGGCGGCgUcggccgauucGUCCa -3'
miRNA:   3'- -GCCAaaGCaGUGGCCGCUGgA----------CAGGg -5'
26675 5' -56.1 NC_005808.1 + 31039 0.68 0.540588
Target:  5'- uGGcUUCGaUgACCGGCGGgCaGUCCUa -3'
miRNA:   3'- gCCaAAGC-AgUGGCCGCUgGaCAGGG- -5'
26675 5' -56.1 NC_005808.1 + 25839 0.68 0.540588
Target:  5'- -----aCGUCGCCGGUGGCUacgCCCa -3'
miRNA:   3'- gccaaaGCAGUGGCCGCUGGacaGGG- -5'
26675 5' -56.1 NC_005808.1 + 5917 0.68 0.529976
Target:  5'- cCGGcaucuUUUCGcCGCUGGCGGCa--UCCCa -3'
miRNA:   3'- -GCC-----AAAGCaGUGGCCGCUGgacAGGG- -5'
26675 5' -56.1 NC_005808.1 + 22614 0.68 0.49863
Target:  5'- gCGaGUUcuacgCGgaCAUCGGCGGCCUG-CCCg -3'
miRNA:   3'- -GC-CAAa----GCa-GUGGCCGCUGGACaGGG- -5'
26675 5' -56.1 NC_005808.1 + 28051 0.68 0.497599
Target:  5'- gGGUUucUCGUCgcuguuguccggcGCCGGCGACgUGgcugauUCCUg -3'
miRNA:   3'- gCCAA--AGCAG-------------UGGCCGCUGgAC------AGGG- -5'
26675 5' -56.1 NC_005808.1 + 20836 0.69 0.468138
Target:  5'- -----cCGU-GCCgGGCGGCCUGUCCUa -3'
miRNA:   3'- gccaaaGCAgUGG-CCGCUGGACAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.