Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26675 | 5' | -56.1 | NC_005808.1 | + | 9063 | 0.67 | 0.583666 |
Target: 5'- cCGGaUUCGcCAgCGGUGGCC-GUgCCg -3' miRNA: 3'- -GCCaAAGCaGUgGCCGCUGGaCAgGG- -5' |
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26675 | 5' | -56.1 | NC_005808.1 | + | 34562 | 0.67 | 0.570652 |
Target: 5'- gCGGUUgagcgucgaggcUGUCACCGGCGAagCUGgcgCCa -3' miRNA: 3'- -GCCAAa-----------GCAGUGGCCGCUg-GACa--GGg -5' |
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26675 | 5' | -56.1 | NC_005808.1 | + | 30374 | 0.66 | 0.616421 |
Target: 5'- -----cUGUUGCCGGUGugCUgcGUCCCg -3' miRNA: 3'- gccaaaGCAGUGGCCGCugGA--CAGGG- -5' |
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26675 | 5' | -56.1 | NC_005808.1 | + | 12896 | 0.66 | 0.616421 |
Target: 5'- uGGUgUCGUCGCCuuuGGCGaugcgcucgGCCgcgCCCa -3' miRNA: 3'- gCCAaAGCAGUGG---CCGC---------UGGacaGGG- -5' |
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26675 | 5' | -56.1 | NC_005808.1 | + | 25323 | 0.66 | 0.63834 |
Target: 5'- cCGGcgcUCGUCGCCGG-GA-UUGUCCa -3' miRNA: 3'- -GCCaa-AGCAGUGGCCgCUgGACAGGg -5' |
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26675 | 5' | -56.1 | NC_005808.1 | + | 6828 | 0.66 | 0.63834 |
Target: 5'- gGGUUUCGUCGuugcccUCGGCGACg-G-CCUu -3' miRNA: 3'- gCCAAAGCAGU------GGCCGCUGgaCaGGG- -5' |
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26675 | 5' | -56.1 | NC_005808.1 | + | 4815 | 0.66 | 0.63834 |
Target: 5'- gCGGgaUUGcUgGCCGGCGACagGUCgCCg -3' miRNA: 3'- -GCCaaAGC-AgUGGCCGCUGgaCAG-GG- -5' |
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26675 | 5' | -56.1 | NC_005808.1 | + | 23250 | 0.66 | 0.63834 |
Target: 5'- aCGGcaauucCGcCGCCuGGCG-CCUGUCCg -3' miRNA: 3'- -GCCaaa---GCaGUGG-CCGCuGGACAGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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