miRNA display CGI


Results 21 - 28 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26675 5' -56.1 NC_005808.1 + 12023 0.67 0.583666
Target:  5'- gCGGc--CGUgGCCGGCGAgguCUUG-CCCa -3'
miRNA:   3'- -GCCaaaGCAgUGGCCGCU---GGACaGGG- -5'
26675 5' -56.1 NC_005808.1 + 9063 0.67 0.583666
Target:  5'- cCGGaUUCGcCAgCGGUGGCC-GUgCCg -3'
miRNA:   3'- -GCCaAAGCaGUgGCCGCUGGaCAgGG- -5'
26675 5' -56.1 NC_005808.1 + 9015 0.67 0.583666
Target:  5'- cCGGaUUCGcCAgCGGUGGCC-GUgCCg -3'
miRNA:   3'- -GCCaAAGCaGUgGCCGCUGGaCAgGG- -5'
26675 5' -56.1 NC_005808.1 + 8950 0.67 0.583666
Target:  5'- cCGGaUUCGcCAgCGGUGGCC-GUgCCg -3'
miRNA:   3'- -GCCaAAGCaGUgGCCGCUGGaCAgGG- -5'
26675 5' -56.1 NC_005808.1 + 8523 0.7 0.429035
Target:  5'- -----aUGUCGCCGGCGAaCUUG-CCCa -3'
miRNA:   3'- gccaaaGCAGUGGCCGCU-GGACaGGG- -5'
26675 5' -56.1 NC_005808.1 + 6828 0.66 0.63834
Target:  5'- gGGUUUCGUCGuugcccUCGGCGACg-G-CCUu -3'
miRNA:   3'- gCCAAAGCAGU------GGCCGCUGgaCaGGG- -5'
26675 5' -56.1 NC_005808.1 + 5917 0.68 0.529976
Target:  5'- cCGGcaucuUUUCGcCGCUGGCGGCa--UCCCa -3'
miRNA:   3'- -GCC-----AAAGCaGUGGCCGCUGgacAGGG- -5'
26675 5' -56.1 NC_005808.1 + 4815 0.66 0.63834
Target:  5'- gCGGgaUUGcUgGCCGGCGACagGUCgCCg -3'
miRNA:   3'- -GCCaaAGC-AgUGGCCGCUGgaCAG-GG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.