miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26676 3' -59.7 NC_005808.1 + 37066 0.66 0.38614
Target:  5'- gACC-UgGGCGgaaccuggGCGGCCGgCGuGUCCUAc -3'
miRNA:   3'- -UGGuAgUCGCa-------CGCCGGC-GU-CAGGAU- -5'
26676 3' -59.7 NC_005808.1 + 6585 0.66 0.38614
Target:  5'- cGCC-UCGGCcagGgGGCUGCGGUCUUu -3'
miRNA:   3'- -UGGuAGUCGca-CgCCGGCGUCAGGAu -5'
26676 3' -59.7 NC_005808.1 + 27501 0.66 0.368392
Target:  5'- aGCUAUuaCGGCGcGCGGUCGCAGcaaagcagCCUGc -3'
miRNA:   3'- -UGGUA--GUCGCaCGCCGGCGUCa-------GGAU- -5'
26676 3' -59.7 NC_005808.1 + 27423 0.66 0.368392
Target:  5'- cGCCuggcgCAccGCGcccgGCGGCCGCAGgcCCUGg -3'
miRNA:   3'- -UGGua---GU--CGCa---CGCCGGCGUCa-GGAU- -5'
26676 3' -59.7 NC_005808.1 + 29048 0.66 0.368392
Target:  5'- cGCCGUgGGCaccgagucagGCGGCCGaCAGUUCg- -3'
miRNA:   3'- -UGGUAgUCGca--------CGCCGGC-GUCAGGau -5'
26676 3' -59.7 NC_005808.1 + 18470 0.66 0.351211
Target:  5'- cGCCggCGGCGU-CGGCCGauucGUCCa- -3'
miRNA:   3'- -UGGuaGUCGCAcGCCGGCgu--CAGGau -5'
26676 3' -59.7 NC_005808.1 + 37811 0.67 0.342837
Target:  5'- cGCCAgcCGGCGUGCuGGgCGCAGUgUg- -3'
miRNA:   3'- -UGGUa-GUCGCACG-CCgGCGUCAgGau -5'
26676 3' -59.7 NC_005808.1 + 14286 0.67 0.334608
Target:  5'- uGCUGUCGGCGaUGCGGCC-CAcGUCg-- -3'
miRNA:   3'- -UGGUAGUCGC-ACGCCGGcGU-CAGgau -5'
26676 3' -59.7 NC_005808.1 + 39065 0.67 0.326524
Target:  5'- gACUGcgCGGUGUGCGGCUGUAuGUCUa- -3'
miRNA:   3'- -UGGUa-GUCGCACGCCGGCGU-CAGGau -5'
26676 3' -59.7 NC_005808.1 + 34877 0.67 0.310793
Target:  5'- gGCCGcCgAGCGUGC-GCUGCAGUUCa- -3'
miRNA:   3'- -UGGUaG-UCGCACGcCGGCGUCAGGau -5'
26676 3' -59.7 NC_005808.1 + 9752 0.68 0.283946
Target:  5'- gACCGUCuGCGgccaggcgaagccguUGCGGCUgguGUAGUCCg- -3'
miRNA:   3'- -UGGUAGuCGC---------------ACGCCGG---CGUCAGGau -5'
26676 3' -59.7 NC_005808.1 + 21740 0.68 0.281079
Target:  5'- cACCGUUGG-GcGCGGCCGC-GUCCa- -3'
miRNA:   3'- -UGGUAGUCgCaCGCCGGCGuCAGGau -5'
26676 3' -59.7 NC_005808.1 + 9688 0.68 0.267088
Target:  5'- aGCCGUgCAGgccGUGGCCGCAGUUCUu -3'
miRNA:   3'- -UGGUA-GUCgcaCGCCGGCGUCAGGAu -5'
26676 3' -59.7 NC_005808.1 + 26173 0.69 0.247164
Target:  5'- cGCCGcCGGCGauuaccccGCGGCCGU-GUCCUAc -3'
miRNA:   3'- -UGGUaGUCGCa-------CGCCGGCGuCAGGAU- -5'
26676 3' -59.7 NC_005808.1 + 41215 0.69 0.234576
Target:  5'- aACCGUUGuGCGcGUGGCCGCGGcgcCCUAu -3'
miRNA:   3'- -UGGUAGU-CGCaCGCCGGCGUCa--GGAU- -5'
26676 3' -59.7 NC_005808.1 + 7241 0.71 0.169977
Target:  5'- cACCcUCGGCGaUGuCGGCCGCccaGGUCUUGa -3'
miRNA:   3'- -UGGuAGUCGC-AC-GCCGGCG---UCAGGAU- -5'
26676 3' -59.7 NC_005808.1 + 26163 0.71 0.160896
Target:  5'- cGCCGUCuGCGaUGCGGUCGCAGauUUCg- -3'
miRNA:   3'- -UGGUAGuCGC-ACGCCGGCGUC--AGGau -5'
26676 3' -59.7 NC_005808.1 + 26455 1.06 0.000378
Target:  5'- cACCAUCAGCGUGCGGCCGCAGUCCUAc -3'
miRNA:   3'- -UGGUAGUCGCACGCCGGCGUCAGGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.