Results 81 - 100 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26677 | 3' | -54.5 | NC_005808.1 | + | 13527 | 0.72 | 0.34607 |
Target: 5'- --uUGCCGUCCgcGCCGaacUGUCG-GCCGCc -3' miRNA: 3'- guuGCGGUAGG--CGGU---AUAGCaCGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 42391 | 0.72 | 0.329367 |
Target: 5'- -uGCGCCAgUUCGCCGUGUCGcccgGCaGCg -3' miRNA: 3'- guUGCGGU-AGGCGGUAUAGCa---CGgCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 295 | 0.72 | 0.328547 |
Target: 5'- -uGCGCCGgaaggcgcgcucuUCCGuCCAgggCGUGCCGUa -3' miRNA: 3'- guUGCGGU-------------AGGC-GGUauaGCACGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 32069 | 0.73 | 0.282874 |
Target: 5'- gCGACGCCAUgcucaucggccCCGCCAacaCG-GCCGCg -3' miRNA: 3'- -GUUGCGGUA-----------GGCGGUauaGCaCGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 13155 | 0.74 | 0.27565 |
Target: 5'- -uGCGCCucgauGUCgGCCAgUGUCG-GCCGCg -3' miRNA: 3'- guUGCGG-----UAGgCGGU-AUAGCaCGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 24189 | 0.74 | 0.261646 |
Target: 5'- aCAACGCCAccUUCGCCGa--CGUGgCCGCc -3' miRNA: 3'- -GUUGCGGU--AGGCGGUauaGCAC-GGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 9221 | 0.74 | 0.253525 |
Target: 5'- gGugGCCGUgCCGCgAUAgccagcgguggcCGUGCCGCg -3' miRNA: 3'- gUugCGGUA-GGCGgUAUa-----------GCACGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 9269 | 0.74 | 0.253525 |
Target: 5'- gGugGCCGUgCCGCgAUAgccagcgguggcCGUGCCGCg -3' miRNA: 3'- gUugCGGUA-GGCGgUAUa-----------GCACGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 9317 | 0.74 | 0.253525 |
Target: 5'- gGugGCCGUgCCGCgAUAgccagcgguggcCGUGCCGCg -3' miRNA: 3'- gUugCGGUA-GGCGgUAUa-----------GCACGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 9365 | 0.74 | 0.253525 |
Target: 5'- gGugGCCGUgCCGCgAUAgccagcgguggcCGUGCCGCg -3' miRNA: 3'- gUugCGGUA-GGCGgUAUa-----------GCACGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 9173 | 0.74 | 0.253525 |
Target: 5'- gGugGCCGUgCCGCgAUAgccagcgguggcCGUGCCGCg -3' miRNA: 3'- gUugCGGUA-GGCGgUAUa-----------GCACGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 9125 | 0.74 | 0.253525 |
Target: 5'- gGugGCCGUgCCGCgAUAgccagcgguggcCGUGCCGCg -3' miRNA: 3'- gUugCGGUA-GGCGgUAUa-----------GCACGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 9077 | 0.74 | 0.253525 |
Target: 5'- gGugGCCGUgCCGCgAUAgccagcgguggcCGUGCCGCg -3' miRNA: 3'- gUugCGGUA-GGCGgUAUa-----------GCACGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 15844 | 0.74 | 0.248227 |
Target: 5'- -cACGCCGUCCGU---GUCGUGCUGg -3' miRNA: 3'- guUGCGGUAGGCGguaUAGCACGGCg -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 8987 | 0.75 | 0.223099 |
Target: 5'- gGugGCCGUgCCGCCAgcgGUggcCGUGCCGg -3' miRNA: 3'- gUugCGGUA-GGCGGUa--UA---GCACGGCg -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 17967 | 0.75 | 0.216579 |
Target: 5'- --cCGCCGgcaCGCCAUGUgguucgaCGUGCCGCu -3' miRNA: 3'- guuGCGGUag-GCGGUAUA-------GCACGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 5806 | 0.76 | 0.194764 |
Target: 5'- gCAGCGCCAgcggauagUCgGgCAUggCGUGCCGCa -3' miRNA: 3'- -GUUGCGGU--------AGgCgGUAuaGCACGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 5579 | 0.76 | 0.189489 |
Target: 5'- cCAACGCUggCCGCCAccgUGUCGaUGuCCGCc -3' miRNA: 3'- -GUUGCGGuaGGCGGU---AUAGC-AC-GGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 4391 | 0.77 | 0.169628 |
Target: 5'- aGGCGCCGUCgCGCCGggccuugagCGUGCgGCa -3' miRNA: 3'- gUUGCGGUAG-GCGGUaua------GCACGgCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 14051 | 0.77 | 0.164962 |
Target: 5'- gAugGCCGgcggCCGCaagGUCGUGCCGUu -3' miRNA: 3'- gUugCGGUa---GGCGguaUAGCACGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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