Results 81 - 100 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26677 | 3' | -54.5 | NC_005808.1 | + | 5579 | 0.76 | 0.189489 |
Target: 5'- cCAACGCUggCCGCCAccgUGUCGaUGuCCGCc -3' miRNA: 3'- -GUUGCGGuaGGCGGU---AUAGC-AC-GGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 5125 | 0.69 | 0.489439 |
Target: 5'- uGGCGCCGUugaaCUGCaa---CGUGCCGCg -3' miRNA: 3'- gUUGCGGUA----GGCGguauaGCACGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 5010 | 0.67 | 0.632402 |
Target: 5'- uCGGCGCaGUCCGCUu--UCaGcGCCGCg -3' miRNA: 3'- -GUUGCGgUAGGCGGuauAG-CaCGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 4947 | 0.68 | 0.532239 |
Target: 5'- gGGCGCCAcgaugcagCCG-CGUAUCGcGCUGCu -3' miRNA: 3'- gUUGCGGUa-------GGCgGUAUAGCaCGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 4656 | 0.7 | 0.438336 |
Target: 5'- ---gGCCAUCgCGUCAagGUCGaUGCCGUa -3' miRNA: 3'- guugCGGUAG-GCGGUa-UAGC-ACGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 4515 | 0.7 | 0.468647 |
Target: 5'- gCGGCGCCcgUgaacguggcgUGCUGggcgGUCGUGCCGCc -3' miRNA: 3'- -GUUGCGGuaG----------GCGGUa---UAGCACGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 4441 | 0.66 | 0.688471 |
Target: 5'- ---gGCCGcaacaCCGCCAgg-CGUGCgGCu -3' miRNA: 3'- guugCGGUa----GGCGGUauaGCACGgCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 4412 | 0.7 | 0.458421 |
Target: 5'- ---aGCCGUUUucaCCAgAUCGUGCCGCg -3' miRNA: 3'- guugCGGUAGGc--GGUaUAGCACGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 4391 | 0.77 | 0.169628 |
Target: 5'- aGGCGCCGUCgCGCCGggccuugagCGUGCgGCa -3' miRNA: 3'- gUUGCGGUAG-GCGGUaua------GCACGgCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 4270 | 0.66 | 0.699561 |
Target: 5'- uCAGCGCCGgcauggugaUgGCCGUGUCG-GCgGUg -3' miRNA: 3'- -GUUGCGGUa--------GgCGGUAUAGCaCGgCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 4178 | 0.66 | 0.666132 |
Target: 5'- ---aGCCggCCGCCucgauggcgggcAUGUUG-GCCGCg -3' miRNA: 3'- guugCGGuaGGCGG------------UAUAGCaCGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 4098 | 0.66 | 0.676206 |
Target: 5'- -uGCGCCGugguguuUCCGCCAgccUGcGCUGCa -3' miRNA: 3'- guUGCGGU-------AGGCGGUauaGCaCGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 4016 | 0.67 | 0.621144 |
Target: 5'- -cGCGCCggCCaCCAgcGUCaUGCCGCg -3' miRNA: 3'- guUGCGGuaGGcGGUa-UAGcACGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 3869 | 0.69 | 0.510652 |
Target: 5'- aGGCGCCGU-CGCUGUAg---GCCGCg -3' miRNA: 3'- gUUGCGGUAgGCGGUAUagcaCGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 3753 | 0.69 | 0.49049 |
Target: 5'- -cACGUCGgugCCGCCGcuggacguagccucgGUCGUGCCGa -3' miRNA: 3'- guUGCGGUa--GGCGGUa--------------UAGCACGGCg -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 2452 | 0.66 | 0.688471 |
Target: 5'- uCGGCGCCAcgaugUUGCaCAaggCGUGCUGCa -3' miRNA: 3'- -GUUGCGGUa----GGCG-GUauaGCACGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 2094 | 0.66 | 0.676206 |
Target: 5'- uCGGC-CCAgguggUCGCCGUGUCGUcgguauagauugcGCCGUu -3' miRNA: 3'- -GUUGcGGUa----GGCGGUAUAGCA-------------CGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 1687 | 0.66 | 0.684018 |
Target: 5'- -cGCGCagguagucgagaaAUUCGCCGUGggccggCGUGCCGg -3' miRNA: 3'- guUGCGg------------UAGGCGGUAUa-----GCACGGCg -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 1160 | 0.69 | 0.483155 |
Target: 5'- --uCGCCGUCgauggugaaggacaGCCGUAUCGcgcUGCCGUg -3' miRNA: 3'- guuGCGGUAGg-------------CGGUAUAGC---ACGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 1095 | 0.66 | 0.710582 |
Target: 5'- --uUGCC-UUgGCCGUGUCGcGCgGCa -3' miRNA: 3'- guuGCGGuAGgCGGUAUAGCaCGgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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