miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26677 3' -54.5 NC_005808.1 + 13527 0.72 0.34607
Target:  5'- --uUGCCGUCCgcGCCGaacUGUCG-GCCGCc -3'
miRNA:   3'- guuGCGGUAGG--CGGU---AUAGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 295 0.72 0.328547
Target:  5'- -uGCGCCGgaaggcgcgcucuUCCGuCCAgggCGUGCCGUa -3'
miRNA:   3'- guUGCGGU-------------AGGC-GGUauaGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 42391 0.72 0.329367
Target:  5'- -uGCGCCAgUUCGCCGUGUCGcccgGCaGCg -3'
miRNA:   3'- guUGCGGU-AGGCGGUAUAGCa---CGgCG- -5'
26677 3' -54.5 NC_005808.1 + 1009 0.71 0.403495
Target:  5'- -cGCGCCAcuggccgggaaauacUCgGCCAUGcugaaCGUGCCGUg -3'
miRNA:   3'- guUGCGGU---------------AGgCGGUAUa----GCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 41970 0.71 0.399733
Target:  5'- uCGACGCCGgaCGCCGUGUCcacggcGCUGCu -3'
miRNA:   3'- -GUUGCGGUagGCGGUAUAGca----CGGCG- -5'
26677 3' -54.5 NC_005808.1 + 8663 0.71 0.390426
Target:  5'- -cGCGCgGUCgGCauug-CGUGCCGCg -3'
miRNA:   3'- guUGCGgUAGgCGguauaGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 36156 0.71 0.409179
Target:  5'- gCGACGCC-UUCGCgGgcgGUgGUGUCGCg -3'
miRNA:   3'- -GUUGCGGuAGGCGgUa--UAgCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 32549 0.71 0.418764
Target:  5'- gGAUGCUG-CCGCCGg--CGaUGCCGCu -3'
miRNA:   3'- gUUGCGGUaGGCGGUauaGC-ACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 4656 0.7 0.438336
Target:  5'- ---gGCCAUCgCGUCAagGUCGaUGCCGUa -3'
miRNA:   3'- guugCGGUAG-GCGGUa-UAGC-ACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 24591 0.7 0.428484
Target:  5'- ---gGCCGUCCGgCGUGUCcuUGCCGg -3'
miRNA:   3'- guugCGGUAGGCgGUAUAGc-ACGGCg -5'
26677 3' -54.5 NC_005808.1 + 36787 0.7 0.438336
Target:  5'- -cACGCCAugcccgacuaUCCGCUGg--CGcUGCCGCg -3'
miRNA:   3'- guUGCGGU----------AGGCGGUauaGC-ACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 18117 0.7 0.438336
Target:  5'- -cGCGCCGUCCGgUAcGUCGaacuUGUCGCc -3'
miRNA:   3'- guUGCGGUAGGCgGUaUAGC----ACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 25049 0.7 0.448317
Target:  5'- -cGCGCgAUCCGCCGUuaccAUCGgGCaGCa -3'
miRNA:   3'- guUGCGgUAGGCGGUA----UAGCaCGgCG- -5'
26677 3' -54.5 NC_005808.1 + 4515 0.7 0.468647
Target:  5'- gCGGCGCCcgUgaacguggcgUGCUGggcgGUCGUGCCGCc -3'
miRNA:   3'- -GUUGCGGuaG----------GCGGUa---UAGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 25381 0.7 0.472769
Target:  5'- aGGCGCCAgaagCCcuuuugcgaguuguaGCCGUc-CGUGCCGCc -3'
miRNA:   3'- gUUGCGGUa---GG---------------CGGUAuaGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 4412 0.7 0.458421
Target:  5'- ---aGCCGUUUucaCCAgAUCGUGCCGCg -3'
miRNA:   3'- guugCGGUAGGc--GGUaUAGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 6577 0.7 0.468647
Target:  5'- --uUGCCAUCCGCC---UCGgccaggggGCUGCg -3'
miRNA:   3'- guuGCGGUAGGCGGuauAGCa-------CGGCG- -5'
26677 3' -54.5 NC_005808.1 + 19287 0.69 0.499996
Target:  5'- -cACGUCAUCCcgGCCAgugcCG-GCCGCa -3'
miRNA:   3'- guUGCGGUAGG--CGGUaua-GCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 9029 0.69 0.478987
Target:  5'- gGugGCCGUgCCGCgAUAgccagCGgugGCCGUg -3'
miRNA:   3'- gUugCGGUA-GGCGgUAUa----GCa--CGGCG- -5'
26677 3' -54.5 NC_005808.1 + 1160 0.69 0.483155
Target:  5'- --uCGCCGUCgauggugaaggacaGCCGUAUCGcgcUGCCGUg -3'
miRNA:   3'- guuGCGGUAGg-------------CGGUAUAGC---ACGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.