miRNA display CGI


Results 61 - 80 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26677 3' -54.5 NC_005808.1 + 17294 0.66 0.670613
Target:  5'- cCGGCGCCGcgggcgcgcauccauUCCGgCAUAUgG-GCCGg -3'
miRNA:   3'- -GUUGCGGU---------------AGGCgGUAUAgCaCGGCg -5'
26677 3' -54.5 NC_005808.1 + 17623 0.66 0.699561
Target:  5'- ---gGCCucgauGUuuGCCGcAUCGUGCgGCa -3'
miRNA:   3'- guugCGG-----UAggCGGUaUAGCACGgCG- -5'
26677 3' -54.5 NC_005808.1 + 17967 0.75 0.216579
Target:  5'- --cCGCCGgcaCGCCAUGUgguucgaCGUGCCGCu -3'
miRNA:   3'- guuGCGGUag-GCGGUAUA-------GCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 18117 0.7 0.438336
Target:  5'- -cGCGCCGUCCGgUAcGUCGaacuUGUCGCc -3'
miRNA:   3'- guUGCGGUAGGCgGUaUAGC----ACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 19287 0.69 0.499996
Target:  5'- -cACGUCAUCCcgGCCAgugcCG-GCCGCa -3'
miRNA:   3'- guUGCGGUAGG--CGGUaua-GCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 19615 0.68 0.5652
Target:  5'- --uUGCCGUCCgggGUCAUG-CGgGCCGCg -3'
miRNA:   3'- guuGCGGUAGG---CGGUAUaGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 20275 0.66 0.677324
Target:  5'- uCGGCGCguUCggcacgGCCAgcagcAUCGUGCUGCc -3'
miRNA:   3'- -GUUGCGguAGg-----CGGUa----UAGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 21734 0.66 0.688471
Target:  5'- gGAUGCCA-CCGUUGgg-CGcgGCCGCg -3'
miRNA:   3'- gUUGCGGUaGGCGGUauaGCa-CGGCG- -5'
26677 3' -54.5 NC_005808.1 + 24189 0.74 0.261646
Target:  5'- aCAACGCCAccUUCGCCGa--CGUGgCCGCc -3'
miRNA:   3'- -GUUGCGGU--AGGCGGUauaGCAC-GGCG- -5'
26677 3' -54.5 NC_005808.1 + 24416 0.68 0.5652
Target:  5'- aAGCGCag-CCgGCCcgauuUGUCgGUGCCGCg -3'
miRNA:   3'- gUUGCGguaGG-CGGu----AUAG-CACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 24591 0.7 0.428484
Target:  5'- ---gGCCGUCCGgCGUGUCcuUGCCGg -3'
miRNA:   3'- guugCGGUAGGCgGUAUAGc-ACGGCg -5'
26677 3' -54.5 NC_005808.1 + 24694 0.66 0.666132
Target:  5'- -cACGCCcaggcuGUCCaucgguGCCAgucgGUCGgGCCGCu -3'
miRNA:   3'- guUGCGG------UAGG------CGGUa---UAGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 25049 0.7 0.448317
Target:  5'- -cGCGCgAUCCGCCGUuaccAUCGgGCaGCa -3'
miRNA:   3'- guUGCGgUAGGCGGUA----UAGCaCGgCG- -5'
26677 3' -54.5 NC_005808.1 + 25323 0.66 0.688471
Target:  5'- cCGGCGCUcgUCGCCGggAUUGUccagGCCGg -3'
miRNA:   3'- -GUUGCGGuaGGCGGUa-UAGCA----CGGCg -5'
26677 3' -54.5 NC_005808.1 + 25381 0.7 0.472769
Target:  5'- aGGCGCCAgaagCCcuuuugcgaguuguaGCCGUc-CGUGCCGCc -3'
miRNA:   3'- gUUGCGGUa---GG---------------CGGUAuaGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 25524 0.68 0.58747
Target:  5'- -cGCGCCGgcUUCGCCu--UCGUG-CGCg -3'
miRNA:   3'- guUGCGGU--AGGCGGuauAGCACgGCG- -5'
26677 3' -54.5 NC_005808.1 + 26115 0.68 0.532239
Target:  5'- -uGCGCCAUgCCGgCAUGuguUCGUcGCgGCa -3'
miRNA:   3'- guUGCGGUA-GGCgGUAU---AGCA-CGgCG- -5'
26677 3' -54.5 NC_005808.1 + 26157 0.66 0.6594
Target:  5'- aCGACGCCGUguucaacgCCGCCGgcgauuaccccgCG-GCCGUg -3'
miRNA:   3'- -GUUGCGGUA--------GGCGGUaua---------GCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 26162 0.68 0.58747
Target:  5'- --uCGCCGUCUGCgAUG-CG-GUCGCa -3'
miRNA:   3'- guuGCGGUAGGCGgUAUaGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 26270 0.66 0.699561
Target:  5'- aGugGCaccgaAUCgGCCAUGUCGUaCuCGCu -3'
miRNA:   3'- gUugCGg----UAGgCGGUAUAGCAcG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.