miRNA display CGI


Results 41 - 60 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26678 5' -52.6 NC_005808.1 + 11583 0.75 0.300126
Target:  5'- cCUcgGCCGGCAa-GCCcgugGACAGGUCGCg -3'
miRNA:   3'- -GAaaCGGCCGUgaUGG----UUGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 37530 0.69 0.596898
Target:  5'- ---gGUCGGCAaUGCCGACAacaucaaugcagcGGUCGCc -3'
miRNA:   3'- gaaaCGGCCGUgAUGGUUGU-------------UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 41997 0.68 0.65547
Target:  5'- --cUGCUGGC-CgACCcGCAGGCgGCc -3'
miRNA:   3'- gaaACGGCCGuGaUGGuUGUUCGgCG- -5'
26678 5' -52.6 NC_005808.1 + 35512 0.68 0.643986
Target:  5'- ---cGUgGGCGC-GCCGugGguaGGCCGCg -3'
miRNA:   3'- gaaaCGgCCGUGaUGGUugU---UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 41549 0.69 0.58661
Target:  5'- ---cGCCGGUucgcggcgacauGCUGCCG-CcGGCCGUg -3'
miRNA:   3'- gaaaCGGCCG------------UGAUGGUuGuUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 25963 0.72 0.411831
Target:  5'- ---gGCCGGCACcugcACCAACAaccucuucaccaacGGCgGCg -3'
miRNA:   3'- gaaaCGGCCGUGa---UGGUUGU--------------UCGgCG- -5'
26678 5' -52.6 NC_005808.1 + 22396 0.75 0.295471
Target:  5'- ---cGCgGGCGCUGCCAagaccgagggcgacgACAaggcgaAGCCGCa -3'
miRNA:   3'- gaaaCGgCCGUGAUGGU---------------UGU------UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 29864 0.76 0.249286
Target:  5'- uCUggGCgCGGCACccagcACCAACGGGCCGg -3'
miRNA:   3'- -GAaaCG-GCCGUGa----UGGUUGUUCGGCg -5'
26678 5' -52.6 NC_005808.1 + 36219 0.71 0.465467
Target:  5'- ---gGCCGGCcugcgccugAUUGCCGACGugGGCCGg -3'
miRNA:   3'- gaaaCGGCCG---------UGAUGGUUGU--UCGGCg -5'
26678 5' -52.6 NC_005808.1 + 17060 0.7 0.541387
Target:  5'- ---gGCUacgggGGCGCUGCCGGCG-GCgGCa -3'
miRNA:   3'- gaaaCGG-----CCGUGAUGGUUGUuCGgCG- -5'
26678 5' -52.6 NC_005808.1 + 4040 0.7 0.519204
Target:  5'- ---aGCCGGcCGCggcgAgCGGCAGGCCaGCg -3'
miRNA:   3'- gaaaCGGCC-GUGa---UgGUUGUUCGG-CG- -5'
26678 5' -52.6 NC_005808.1 + 38340 0.72 0.444789
Target:  5'- --aUGCCGGCGCUgacgGCCGGCA--CCGa -3'
miRNA:   3'- gaaACGGCCGUGA----UGGUUGUucGGCg -5'
26678 5' -52.6 NC_005808.1 + 20348 0.73 0.349793
Target:  5'- ---gGCCGGCgaauacgccaucGCgGCCGACAaccagGGCCGCg -3'
miRNA:   3'- gaaaCGGCCG------------UGaUGGUUGU-----UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 13746 0.69 0.620993
Target:  5'- ---gGCgCGGCGCUGggacagcuUCGGCAaguccGGCCGCa -3'
miRNA:   3'- gaaaCG-GCCGUGAU--------GGUUGU-----UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 31479 0.69 0.620993
Target:  5'- --cUGCUcGCACguuugaACCAAUuGGCCGCa -3'
miRNA:   3'- gaaACGGcCGUGa-----UGGUUGuUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 23563 0.69 0.563879
Target:  5'- ---cGCCGGCggccGCUACCAggGCua-CCGCa -3'
miRNA:   3'- gaaaCGGCCG----UGAUGGU--UGuucGGCG- -5'
26678 5' -52.6 NC_005808.1 + 36993 0.68 0.643986
Target:  5'- ---cGCCGugGCUACCAACGAGgCGg -3'
miRNA:   3'- gaaaCGGCcgUGAUGGUUGUUCgGCg -5'
26678 5' -52.6 NC_005808.1 + 18966 0.66 0.791957
Target:  5'- ---cGCCGGCuaccGCgaaACCAACcgcacguuuuaccggGGGCUGCa -3'
miRNA:   3'- gaaaCGGCCG----UGa--UGGUUG---------------UUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 26338 0.68 0.663496
Target:  5'- ---gGCCGcGCGCgagGCCAACGccauccgccauaucGuGCCGCu -3'
miRNA:   3'- gaaaCGGC-CGUGa--UGGUUGU--------------U-CGGCG- -5'
26678 5' -52.6 NC_005808.1 + 24247 0.68 0.637089
Target:  5'- ---cGCCGGCAaacagguggucauccCUAugcCCAcCAAGCUGCg -3'
miRNA:   3'- gaaaCGGCCGU---------------GAU---GGUuGUUCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.