miRNA display CGI


Results 61 - 80 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26678 5' -52.6 NC_005808.1 + 14819 0.67 0.734511
Target:  5'- ---cGgCGGCGCUGCCuucgccCAGGUCGa -3'
miRNA:   3'- gaaaCgGCCGUGAUGGuu----GUUCGGCg -5'
26678 5' -52.6 NC_005808.1 + 11516 0.67 0.734511
Target:  5'- ---cGCCuGCGCUGgCGugAGGCCcuGCg -3'
miRNA:   3'- gaaaCGGcCGUGAUgGUugUUCGG--CG- -5'
26678 5' -52.6 NC_005808.1 + 4293 0.67 0.734511
Target:  5'- --nUGUCGGCggugaACUgcACCAGCuuGCCGUu -3'
miRNA:   3'- gaaACGGCCG-----UGA--UGGUUGuuCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 3885 0.67 0.734511
Target:  5'- ---gGCC-GCGCUGCCGuc--GCCGCc -3'
miRNA:   3'- gaaaCGGcCGUGAUGGUuguuCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 7653 0.67 0.734511
Target:  5'- ---cGCCGGCuccUUGCCGuacACGcGCCGUu -3'
miRNA:   3'- gaaaCGGCCGu--GAUGGU---UGUuCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 19945 0.67 0.723452
Target:  5'- -cUUGUCGGCcguggacagGCaACCcagguuucgGGCAGGCCGCc -3'
miRNA:   3'- gaAACGGCCG---------UGaUGG---------UUGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 30287 0.67 0.723452
Target:  5'- ---cGCCGGaaaACgucggguagcGCCccuGCGAGCCGCu -3'
miRNA:   3'- gaaaCGGCCg--UGa---------UGGu--UGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 467 0.67 0.716769
Target:  5'- -cUUGCgGGCGCUGucgcggucggaugccUCGGCAGcauacugcGCCGCg -3'
miRNA:   3'- gaAACGgCCGUGAU---------------GGUUGUU--------CGGCG- -5'
26678 5' -52.6 NC_005808.1 + 11583 0.67 0.701051
Target:  5'- --aUGCCGcccaGgGCcGCCGGCuGGCCGCc -3'
miRNA:   3'- gaaACGGC----CgUGaUGGUUGuUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 34221 0.67 0.723452
Target:  5'- ---aGCCaGCGCgagGCCGgguuCGAGCCGg -3'
miRNA:   3'- gaaaCGGcCGUGa--UGGUu---GUUCGGCg -5'
26678 5' -52.6 NC_005808.1 + 9378 0.67 0.712295
Target:  5'- ---gGCCGcguGCAUUgugcaGCCAcugcaugucgcGCAGGCCGCg -3'
miRNA:   3'- gaaaCGGC---CGUGA-----UGGU-----------UGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 9888 0.67 0.689734
Target:  5'- uCUcgGCCaGGCGCgugGCgAuguCGAGCUGCa -3'
miRNA:   3'- -GAaaCGG-CCGUGa--UGgUu--GUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 42369 0.67 0.689734
Target:  5'- ---cGCCGGCcCUA-CAACAuGCgGCa -3'
miRNA:   3'- gaaaCGGCCGuGAUgGUUGUuCGgCG- -5'
26678 5' -52.6 NC_005808.1 + 8897 0.67 0.689734
Target:  5'- -aUUGUgaaUGGCGCUAUCGGC-GGCgCGCu -3'
miRNA:   3'- gaAACG---GCCGUGAUGGUUGuUCG-GCG- -5'
26678 5' -52.6 NC_005808.1 + 37787 0.67 0.701051
Target:  5'- ---cGCCGGCcCcgACCucuACAAGCUGg -3'
miRNA:   3'- gaaaCGGCCGuGa-UGGu--UGUUCGGCg -5'
26678 5' -52.6 NC_005808.1 + 27423 0.67 0.701051
Target:  5'- ---cGCCuGGCGCaccgcgcCCGGCG-GCCGCa -3'
miRNA:   3'- gaaaCGG-CCGUGau-----GGUUGUuCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 19477 0.67 0.701051
Target:  5'- ---aGCUuGCGCcaggUGCCGguggGCAGGCCGCu -3'
miRNA:   3'- gaaaCGGcCGUG----AUGGU----UGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 38178 0.67 0.701051
Target:  5'- ---gGCCgGGUACgACCuACGAcuGCCGCa -3'
miRNA:   3'- gaaaCGG-CCGUGaUGGuUGUU--CGGCG- -5'
26678 5' -52.6 NC_005808.1 + 2744 0.68 0.63249
Target:  5'- ---gGcCCGGCGCUGCUcgGGCGuGCCGa -3'
miRNA:   3'- gaaaC-GGCCGUGAUGG--UUGUuCGGCg -5'
26678 5' -52.6 NC_005808.1 + 24247 0.68 0.637089
Target:  5'- ---cGCCGGCAaacagguggucauccCUAugcCCAcCAAGCUGCg -3'
miRNA:   3'- gaaaCGGCCGU---------------GAU---GGUuGUUCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.