miRNA display CGI


Results 61 - 80 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26678 5' -52.6 NC_005808.1 + 11583 0.67 0.701051
Target:  5'- --aUGCCGcccaGgGCcGCCGGCuGGCCGCc -3'
miRNA:   3'- gaaACGGC----CgUGaUGGUUGuUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 12285 0.69 0.609508
Target:  5'- -gUUGCUGGCccaGCgUGCCGGCuacGGCgGCg -3'
miRNA:   3'- gaAACGGCCG---UG-AUGGUUGu--UCGgCG- -5'
26678 5' -52.6 NC_005808.1 + 12564 0.72 0.404072
Target:  5'- -cUUGCCGGCcucgcGCUGCgCGGCGaugaaauAGCCGUc -3'
miRNA:   3'- gaAACGGCCG-----UGAUG-GUUGU-------UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 12991 0.67 0.689734
Target:  5'- ---cGcCCGGCGCUggacaACUGGCAAaCCGCg -3'
miRNA:   3'- gaaaC-GGCCGUGA-----UGGUUGUUcGGCG- -5'
26678 5' -52.6 NC_005808.1 + 13210 0.66 0.787859
Target:  5'- --cUGCUGGC-CUACCGcgcCGAGuCCGa -3'
miRNA:   3'- gaaACGGCCGuGAUGGUu--GUUC-GGCg -5'
26678 5' -52.6 NC_005808.1 + 13300 0.66 0.787859
Target:  5'- --gUGCUgGGCAaggGCCAGCAGuucGUCGCc -3'
miRNA:   3'- gaaACGG-CCGUga-UGGUUGUU---CGGCG- -5'
26678 5' -52.6 NC_005808.1 + 13706 0.67 0.689734
Target:  5'- ---gGUCGGCGacgGCCAGCAAcuacGCCaGCa -3'
miRNA:   3'- gaaaCGGCCGUga-UGGUUGUU----CGG-CG- -5'
26678 5' -52.6 NC_005808.1 + 13746 0.69 0.620993
Target:  5'- ---gGCgCGGCGCUGggacagcuUCGGCAaguccGGCCGCa -3'
miRNA:   3'- gaaaCG-GCCGUGAU--------GGUUGU-----UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 14025 0.73 0.395454
Target:  5'- --cUGCCGGUg--GCCGACGugcgcGCCGCg -3'
miRNA:   3'- gaaACGGCCGugaUGGUUGUu----CGGCG- -5'
26678 5' -52.6 NC_005808.1 + 14771 0.72 0.434644
Target:  5'- ---gGCCGGCGCcACCG-CGGGCagCGCg -3'
miRNA:   3'- gaaaCGGCCGUGaUGGUuGUUCG--GCG- -5'
26678 5' -52.6 NC_005808.1 + 14819 0.67 0.734511
Target:  5'- ---cGgCGGCGCUGCCuucgccCAGGUCGa -3'
miRNA:   3'- gaaaCgGCCGUGAUGGuu----GUUCGGCg -5'
26678 5' -52.6 NC_005808.1 + 14845 0.66 0.777492
Target:  5'- ---aGCCGG-ACgagGgCAGCGAGuuGCg -3'
miRNA:   3'- gaaaCGGCCgUGa--UgGUUGUUCggCG- -5'
26678 5' -52.6 NC_005808.1 + 14889 0.68 0.666932
Target:  5'- --aUGaCCGGCggcgagccGCUGCCGGCGcGCgGCc -3'
miRNA:   3'- gaaAC-GGCCG--------UGAUGGUUGUuCGgCG- -5'
26678 5' -52.6 NC_005808.1 + 15099 0.66 0.745457
Target:  5'- ---aGCUGGCG--GCCGA--GGCCGCc -3'
miRNA:   3'- gaaaCGGCCGUgaUGGUUguUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 15147 0.73 0.358618
Target:  5'- ---cGCUGGCA-UACCAGCGccagggccugcGGCCGCc -3'
miRNA:   3'- gaaaCGGCCGUgAUGGUUGU-----------UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 15913 0.66 0.756278
Target:  5'- -cUUGCCGcUGCUGCUgaugaaccacacGAUAGGCUGCg -3'
miRNA:   3'- gaAACGGCcGUGAUGG------------UUGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 16387 0.68 0.63249
Target:  5'- --gUGCCGGCAaagcaucggcgUUGCUcgaaguagGACAcGGCCGCg -3'
miRNA:   3'- gaaACGGCCGU-----------GAUGG--------UUGU-UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 16519 0.72 0.434644
Target:  5'- --gUGCCGGUGgUcuggccgauauaGCCGuACAGGCCGCc -3'
miRNA:   3'- gaaACGGCCGUgA------------UGGU-UGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 16667 0.69 0.609508
Target:  5'- ---aGCgCGGCgacauGCUggGCCAccGCAAGCUGCa -3'
miRNA:   3'- gaaaCG-GCCG-----UGA--UGGU--UGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 16840 0.69 0.620993
Target:  5'- -gUUGCCGccgcccagcaGCGCgcCCAGCGugcuGCCGCc -3'
miRNA:   3'- gaAACGGC----------CGUGauGGUUGUu---CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.