miRNA display CGI


Results 61 - 80 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26678 5' -52.6 NC_005808.1 + 657 0.73 0.349793
Target:  5'- --gUGCCcaaGGCugUaGCCAcCAGGCCGCc -3'
miRNA:   3'- gaaACGG---CCGugA-UGGUuGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 16939 0.73 0.395454
Target:  5'- ---gGCaCGGCGCcguCCAGCAGcguGCCGCg -3'
miRNA:   3'- gaaaCG-GCCGUGau-GGUUGUU---CGGCG- -5'
26678 5' -52.6 NC_005808.1 + 21120 0.73 0.395454
Target:  5'- -cUUGCUGGUaucgacGCUGcCCAGCuuGGCCGCc -3'
miRNA:   3'- gaAACGGCCG------UGAU-GGUUGu-UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 12564 0.72 0.404072
Target:  5'- -cUUGCCGGCcucgcGCUGCgCGGCGaugaaauAGCCGUc -3'
miRNA:   3'- gaAACGGCCG-----UGAUG-GUUGU-------UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 39852 0.72 0.404072
Target:  5'- ---gGUCGGCACgcCCGAgcagcgcCGGGCCGCg -3'
miRNA:   3'- gaaaCGGCCGUGauGGUU-------GUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 5014 0.72 0.405036
Target:  5'- -aUUGuuGGCAUUACCGACua-CUGCg -3'
miRNA:   3'- gaAACggCCGUGAUGGUUGuucGGCG- -5'
26678 5' -52.6 NC_005808.1 + 16519 0.72 0.434644
Target:  5'- --gUGCCGGUGgUcuggccgauauaGCCGuACAGGCCGCc -3'
miRNA:   3'- gaaACGGCCGUgA------------UGGU-UGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 18279 0.72 0.434644
Target:  5'- -cUUGCCGGC-Cgu-CAGCGGGCCGg -3'
miRNA:   3'- gaAACGGCCGuGaugGUUGUUCGGCg -5'
26678 5' -52.6 NC_005808.1 + 24203 0.72 0.443768
Target:  5'- ---aGCacguaGGCGCUGCCAaaguccgGCGAGCgGCc -3'
miRNA:   3'- gaaaCGg----CCGUGAUGGU-------UGUUCGgCG- -5'
26678 5' -52.6 NC_005808.1 + 32330 0.71 0.455064
Target:  5'- ---gGCCGGCGuc-CCGACAAccGCCGCc -3'
miRNA:   3'- gaaaCGGCCGUgauGGUUGUU--CGGCG- -5'
26678 5' -52.6 NC_005808.1 + 12285 0.69 0.609508
Target:  5'- -gUUGCUGGCccaGCgUGCCGGCuacGGCgGCg -3'
miRNA:   3'- gaAACGGCCG---UG-AUGGUUGu--UCGgCG- -5'
26678 5' -52.6 NC_005808.1 + 963 0.69 0.563879
Target:  5'- --gUGCCcacGGCAgCUugCAGCcacuuGGCCGCc -3'
miRNA:   3'- gaaACGG---CCGU-GAugGUUGu----UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 32077 0.69 0.563879
Target:  5'- --aUGCucauCGGCcCcGCCAACAcGGCCGCg -3'
miRNA:   3'- gaaACG----GCCGuGaUGGUUGU-UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 11428 0.69 0.58661
Target:  5'- ---aGCCGGCguGCaggucGCCGAUAAGgCGCg -3'
miRNA:   3'- gaaaCGGCCG--UGa----UGGUUGUUCgGCG- -5'
26678 5' -52.6 NC_005808.1 + 37467 0.69 0.598043
Target:  5'- --cUGCgCGGCACguugcaguUCAACGgcgccAGCCGCa -3'
miRNA:   3'- gaaACG-GCCGUGau------GGUUGU-----UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 334 0.69 0.609508
Target:  5'- ---gGCUGGCGgUggcgucGCgCAGCAGGCCGUc -3'
miRNA:   3'- gaaaCGGCCGUgA------UG-GUUGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 1715 0.69 0.619844
Target:  5'- ---gGCCGGCG-UGCCGGCGAGggcguccaaguccUCGCg -3'
miRNA:   3'- gaaaCGGCCGUgAUGGUUGUUC-------------GGCG- -5'
26678 5' -52.6 NC_005808.1 + 18365 0.71 0.475992
Target:  5'- gUUUGCCGGCGgcgagguuggccUUGCCGAUGGcGCCGg -3'
miRNA:   3'- gAAACGGCCGU------------GAUGGUUGUU-CGGCg -5'
26678 5' -52.6 NC_005808.1 + 34873 0.68 0.63134
Target:  5'- ---aGCCGGCcgccgagcgugcGCUGCaguucauCGGCAAGCCGg -3'
miRNA:   3'- gaaaCGGCCG------------UGAUG-------GUUGUUCGGCg -5'
26678 5' -52.6 NC_005808.1 + 28668 0.71 0.486634
Target:  5'- --gUGCCGGCGgcCUcGCCAGCGcGGCgCGCc -3'
miRNA:   3'- gaaACGGCCGU--GA-UGGUUGU-UCG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.