miRNA display CGI


Results 61 - 80 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26678 5' -52.6 NC_005808.1 + 33910 0.66 0.777492
Target:  5'- ---gGCCaGUAC-ACCAACGccgaGGUCGCg -3'
miRNA:   3'- gaaaCGGcCGUGaUGGUUGU----UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 14845 0.66 0.777492
Target:  5'- ---aGCCGG-ACgagGgCAGCGAGuuGCg -3'
miRNA:   3'- gaaaCGGCCgUGa--UgGUUGUUCggCG- -5'
26678 5' -52.6 NC_005808.1 + 9688 0.66 0.777492
Target:  5'- ---aGCCGuGCAg-GCCGu--GGCCGCa -3'
miRNA:   3'- gaaaCGGC-CGUgaUGGUuguUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 34949 0.66 0.776446
Target:  5'- --gUGUaCGGCAaggaGCCGGCGugggucgAGCCGCg -3'
miRNA:   3'- gaaACG-GCCGUga--UGGUUGU-------UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 37965 0.66 0.766961
Target:  5'- -cUUGCCGacccugcggcaGCGCggGCCAACAuuGGCCugGCu -3'
miRNA:   3'- gaAACGGC-----------CGUGa-UGGUUGU--UCGG--CG- -5'
26678 5' -52.6 NC_005808.1 + 776 0.66 0.766961
Target:  5'- -cUUGCCGGUcagaucgggccGCUGCgcaaucgccguCAGCAGGUgGCu -3'
miRNA:   3'- gaAACGGCCG-----------UGAUG-----------GUUGUUCGgCG- -5'
26678 5' -52.6 NC_005808.1 + 24553 0.66 0.763771
Target:  5'- ---cGCCGGUaaggcccccaagcaGCccGCCGACAAGaacCCGCa -3'
miRNA:   3'- gaaaCGGCCG--------------UGa-UGGUUGUUC---GGCG- -5'
26678 5' -52.6 NC_005808.1 + 525 0.66 0.756278
Target:  5'- ---cGCUGGCcgaaUACCucggacgugcGCGGGCCGCu -3'
miRNA:   3'- gaaaCGGCCGug--AUGGu---------UGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 39735 0.66 0.756278
Target:  5'- -cUUGCaUGGCuCUGCCAACGcuacGGCUugGCg -3'
miRNA:   3'- gaAACG-GCCGuGAUGGUUGU----UCGG--CG- -5'
26678 5' -52.6 NC_005808.1 + 29303 0.66 0.756278
Target:  5'- ---cGCCGGCc---CCGGCGcGCUGCa -3'
miRNA:   3'- gaaaCGGCCGugauGGUUGUuCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 1181 0.66 0.755202
Target:  5'- ---aGCCGuaucGCGCUGCCGugAAuuucuacGCCGUc -3'
miRNA:   3'- gaaaCGGC----CGUGAUGGUugUU-------CGGCG- -5'
26678 5' -52.6 NC_005808.1 + 10523 0.66 0.745457
Target:  5'- --gUGuuGGCGggGCCGAUGAGCaugGCg -3'
miRNA:   3'- gaaACggCCGUgaUGGUUGUUCGg--CG- -5'
26678 5' -52.6 NC_005808.1 + 22326 0.66 0.745457
Target:  5'- --gUGCgGGCAacgacgGCCAACAgcagcaacAGCCGa -3'
miRNA:   3'- gaaACGgCCGUga----UGGUUGU--------UCGGCg -5'
26678 5' -52.6 NC_005808.1 + 15099 0.66 0.745457
Target:  5'- ---aGCUGGCG--GCCGA--GGCCGCc -3'
miRNA:   3'- gaaaCGGCCGUgaUGGUUguUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 19591 0.66 0.745457
Target:  5'- ---aGCaGGCGC-AgCAGCAGGCCGa -3'
miRNA:   3'- gaaaCGgCCGUGaUgGUUGUUCGGCg -5'
26678 5' -52.6 NC_005808.1 + 1804 0.67 0.734511
Target:  5'- aUUUGCUGGUACUGuuccaagucCCAcCAguGGCCGa -3'
miRNA:   3'- gAAACGGCCGUGAU---------GGUuGU--UCGGCg -5'
26678 5' -52.6 NC_005808.1 + 19035 0.67 0.734511
Target:  5'- ---cGCCcGCAcCUGCCGGCGaugucGGCCGa -3'
miRNA:   3'- gaaaCGGcCGU-GAUGGUUGU-----UCGGCg -5'
26678 5' -52.6 NC_005808.1 + 41608 0.67 0.727888
Target:  5'- --gUGaaccaCGGCACcgGCCAggcggccaaguggcuGCAAGCUGCc -3'
miRNA:   3'- gaaACg----GCCGUGa-UGGU---------------UGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 13706 0.67 0.689734
Target:  5'- ---gGUCGGCGacgGCCAGCAAcuacGCCaGCa -3'
miRNA:   3'- gaaaCGGCCGUga-UGGUUGUU----CGG-CG- -5'
26678 5' -52.6 NC_005808.1 + 40460 0.67 0.689734
Target:  5'- ---cGgCGGCGCgguugACCGGCu-GCUGCa -3'
miRNA:   3'- gaaaCgGCCGUGa----UGGUUGuuCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.