miRNA display CGI


Results 81 - 100 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26678 5' -52.6 NC_005808.1 + 32077 0.69 0.563879
Target:  5'- --aUGCucauCGGCcCcGCCAACAcGGCCGCg -3'
miRNA:   3'- gaaACG----GCCGuGaUGGUUGU-UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 963 0.69 0.563879
Target:  5'- --gUGCCcacGGCAgCUugCAGCcacuuGGCCGCc -3'
miRNA:   3'- gaaACGG---CCGU-GAugGUUGu----UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 28452 0.7 0.541387
Target:  5'- aUUU-CCGGCACguaCAugAGGCCGUc -3'
miRNA:   3'- gAAAcGGCCGUGaugGUugUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 2570 0.7 0.538039
Target:  5'- -aUUGCCGGCuuugaguucagcuuGCaagGCCAGCAGGuuGg -3'
miRNA:   3'- gaAACGGCCG--------------UGa--UGGUUGUUCggCg -5'
26678 5' -52.6 NC_005808.1 + 23825 0.7 0.530253
Target:  5'- cCUUUGaagugCGGCACcggcgugACCAGCAGGCagGCg -3'
miRNA:   3'- -GAAACg----GCCGUGa------UGGUUGUUCGg-CG- -5'
26678 5' -52.6 NC_005808.1 + 32820 0.7 0.530253
Target:  5'- --cUGCCGGUcggACUAC--ACcAGCCGCa -3'
miRNA:   3'- gaaACGGCCG---UGAUGguUGuUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 25309 0.7 0.530253
Target:  5'- ---gGCCGGCcCUGCCAccggcGCucGUCGCc -3'
miRNA:   3'- gaaaCGGCCGuGAUGGU-----UGuuCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 8808 0.7 0.526929
Target:  5'- ---cGCCGGuCAgUACCGaucugcugggucggGCcAGCCGCa -3'
miRNA:   3'- gaaaCGGCC-GUgAUGGU--------------UGuUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 21736 0.7 0.518103
Target:  5'- --aUGCCaccguugGGCGCgGCCGcguccacauaggACAGGCCGCc -3'
miRNA:   3'- gaaACGG-------CCGUGaUGGU------------UGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 4260 0.7 0.518103
Target:  5'- --gUGCCGGC-CgucagcGCCGGCAuggugauGGCCGUg -3'
miRNA:   3'- gaaACGGCCGuGa-----UGGUUGU-------UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 39763 0.71 0.497387
Target:  5'- --gUGCUGGCGCcGCUGcGCGuGGCCGCg -3'
miRNA:   3'- gaaACGGCCGUGaUGGU-UGU-UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 38367 0.7 0.551474
Target:  5'- ---aGCUGGCAgaaaacgUUACgCAagccGCAAGCCGCg -3'
miRNA:   3'- gaaaCGGCCGU-------GAUG-GU----UGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 13706 0.67 0.689734
Target:  5'- ---gGUCGGCGacgGCCAGCAAcuacGCCaGCa -3'
miRNA:   3'- gaaaCGGCCGUga-UGGUUGUU----CGG-CG- -5'
26678 5' -52.6 NC_005808.1 + 40460 0.67 0.689734
Target:  5'- ---cGgCGGCGCgguugACCGGCu-GCUGCa -3'
miRNA:   3'- gaaaCgGCCGUGa----UGGUUGuuCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 19801 0.67 0.701051
Target:  5'- ---aGuCCGGCACcaUGCUGACcGGcCCGCa -3'
miRNA:   3'- gaaaC-GGCCGUG--AUGGUUGuUC-GGCG- -5'
26678 5' -52.6 NC_005808.1 + 8295 0.67 0.701051
Target:  5'- --cUGCCGGgGCagugcaGCCAGCGGuGCgCGCu -3'
miRNA:   3'- gaaACGGCCgUGa-----UGGUUGUU-CG-GCG- -5'
26678 5' -52.6 NC_005808.1 + 8744 0.67 0.701051
Target:  5'- ---gGCgCGGCGCUACCGucaACAuggaauuuGCgCGCg -3'
miRNA:   3'- gaaaCG-GCCGUGAUGGU---UGUu-------CG-GCG- -5'
26678 5' -52.6 NC_005808.1 + 29528 0.67 0.711174
Target:  5'- ---gGCCGaGCGCcaauUCAACAugcagacGGCCGCa -3'
miRNA:   3'- gaaaCGGC-CGUGau--GGUUGU-------UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 9104 0.67 0.712295
Target:  5'- ---gGCCGuGcCGCgauaGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaaCGGC-C-GUGa---UGGUUGU--UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 9392 0.67 0.712295
Target:  5'- ---gGCCGuGcCGCgauaGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaaCGGC-C-GUGa---UGGUUGU--UCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.