miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2668 5' -65.1 NC_001491.2 + 2793 0.66 0.52016
Target:  5'- gUACCCC-CgGGCgGACGAGGagaaggaGGCCGa -3'
miRNA:   3'- -GUGGGGcGgCCG-UUGCUCCgg-----CCGGU- -5'
2668 5' -65.1 NC_001491.2 + 1785 0.66 0.52016
Target:  5'- uGCgCUCGCCGGC-GCGAGuGUCcaccguguaGGCCAc -3'
miRNA:   3'- gUG-GGGCGGCCGuUGCUC-CGG---------CCGGU- -5'
2668 5' -65.1 NC_001491.2 + 10134 0.66 0.510938
Target:  5'- gCGCCgggCCGCCcGCG--GAGGCCuGGCCGc -3'
miRNA:   3'- -GUGG---GGCGGcCGUugCUCCGG-CCGGU- -5'
2668 5' -65.1 NC_001491.2 + 32501 0.66 0.501784
Target:  5'- gUACCUgGagGGCGuccGCGAGGCCaaucuGGCCAa -3'
miRNA:   3'- -GUGGGgCggCCGU---UGCUCCGG-----CCGGU- -5'
2668 5' -65.1 NC_001491.2 + 11918 0.66 0.501784
Target:  5'- cCACCCCcucgaCCGGC-ACGcGGCaCGGCa- -3'
miRNA:   3'- -GUGGGGc----GGCCGuUGCuCCG-GCCGgu -5'
2668 5' -65.1 NC_001491.2 + 35032 0.66 0.501784
Target:  5'- aCGCCUgGgCCGGCAAcuggacCGGGGCCccggacgucucGGCCc -3'
miRNA:   3'- -GUGGGgC-GGCCGUU------GCUCCGG-----------CCGGu -5'
2668 5' -65.1 NC_001491.2 + 25286 0.66 0.501784
Target:  5'- -uCCCCGUCGcaccCAGCGAGguGCCGuGCCGc -3'
miRNA:   3'- guGGGGCGGCc---GUUGCUC--CGGC-CGGU- -5'
2668 5' -65.1 NC_001491.2 + 64352 0.66 0.492704
Target:  5'- cCGCCacacaCGCCuGCAucACGGGGggguugauggacCCGGCCAa -3'
miRNA:   3'- -GUGGg----GCGGcCGU--UGCUCC------------GGCCGGU- -5'
2668 5' -65.1 NC_001491.2 + 44031 0.66 0.4837
Target:  5'- gGCCCUgGCCauGGCAgcacaGCGAagaaaaucaaucGGUCGGCCAg -3'
miRNA:   3'- gUGGGG-CGG--CCGU-----UGCU------------CCGGCCGGU- -5'
2668 5' -65.1 NC_001491.2 + 147138 0.66 0.478335
Target:  5'- cUACCCUuccgGCCaGGCAGCGAaGGacaaccuccguuucuUCGGCCAg -3'
miRNA:   3'- -GUGGGG----CGG-CCGUUGCU-CC---------------GGCCGGU- -5'
2668 5' -65.1 NC_001491.2 + 4683 0.66 0.465054
Target:  5'- cCAuCCCCGCgGGCGguuCG-GGCCucuccagcgucuuGGCCAg -3'
miRNA:   3'- -GU-GGGGCGgCCGUu--GCuCCGG-------------CCGGU- -5'
2668 5' -65.1 NC_001491.2 + 24731 0.67 0.439937
Target:  5'- cCGCCCCGCCccgGGgAcccGCGGGcGCCcGCCGc -3'
miRNA:   3'- -GUGGGGCGG---CCgU---UGCUC-CGGcCGGU- -5'
2668 5' -65.1 NC_001491.2 + 34036 0.67 0.431457
Target:  5'- -uCCUCGcCCGGCGGCGAGcccuucuCCGGCUc -3'
miRNA:   3'- guGGGGC-GGCCGUUGCUCc------GGCCGGu -5'
2668 5' -65.1 NC_001491.2 + 3826 0.67 0.423073
Target:  5'- gGCUggCCG-CGGCAGCGGcGGCCugGGCCGg -3'
miRNA:   3'- gUGG--GGCgGCCGUUGCU-CCGG--CCGGU- -5'
2668 5' -65.1 NC_001491.2 + 148928 0.67 0.423073
Target:  5'- gGCCCCacGCUGGCugcggggggagAugGGGGCCaGGCUc -3'
miRNA:   3'- gUGGGG--CGGCCG-----------UugCUCCGG-CCGGu -5'
2668 5' -65.1 NC_001491.2 + 11726 0.67 0.423073
Target:  5'- cCGCgCUGCUGGCAucgGCGGcGUCGGCCc -3'
miRNA:   3'- -GUGgGGCGGCCGU---UGCUcCGGCCGGu -5'
2668 5' -65.1 NC_001491.2 + 35947 0.67 0.423073
Target:  5'- gCACCCCGgcccgagccCCGGCGugGcccAGGCCcuccGCCGc -3'
miRNA:   3'- -GUGGGGC---------GGCCGUugC---UCCGGc---CGGU- -5'
2668 5' -65.1 NC_001491.2 + 9836 0.67 0.423073
Target:  5'- aCGCCCCGCCGaggaaauacaGCucGCGgaGGGCCGcGCgCAa -3'
miRNA:   3'- -GUGGGGCGGC----------CGu-UGC--UCCGGC-CG-GU- -5'
2668 5' -65.1 NC_001491.2 + 27014 0.67 0.414787
Target:  5'- gGgUCCGCCgaguggaagacgGGCAugG-GGCUGGCCGc -3'
miRNA:   3'- gUgGGGCGG------------CCGUugCuCCGGCCGGU- -5'
2668 5' -65.1 NC_001491.2 + 32312 0.67 0.414787
Target:  5'- aACCCCGUCGGCcGCc-GGCUcucccgGGCCGu -3'
miRNA:   3'- gUGGGGCGGCCGuUGcuCCGG------CCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.